Stutzerimonas stutzeri RCH2: Psest_3985
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Entry
Psest_3985 CDS
T02391
Name
(GenBank) ATP-dependent DNA helicase, RecQ-like protein
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
psh
Stutzerimonas stutzeri RCH2
Pathway
psh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Psest_3985
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psh03019
]
Psest_3985
03400 DNA repair and recombination proteins [BR:
psh03400
]
Psest_3985
Enzymes [BR:
psh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Psest_3985
Messenger RNA biogenesis [BR:
psh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Psest_3985
DNA repair and recombination proteins [BR:
psh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Psest_3985
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
AAA_22
DUF934
Motif
Other DBs
NCBI-ProteinID:
AGA88459
UniProt:
L0GT31
LinkDB
All DBs
Position
complement(4153993..4155918)
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AA seq
641 aa
AA seq
DB search
MIEQTLVQTFGYDRFRTGQEQAIRAVVAGRSVAAIFPTGSGKSLCYQLPALLLPHLTLVV
SPLLALMQDQLAFLHRHGIAAASIDSAQSREQASETMARAKSGELKILMISVERLKNERF
RNFISQVPISLLVVDEAHCISEWGHNFRPDYLKLPDYQRQFNIPQVLLLTATATPPVIAD
MQGKFAIAADDVVTTGFYRPNLNLLVEPVSGFNKQRRLVEWLGDKSGQPTIVYVTQQKTA
EQIAEHLAQRGFPASAYHAGMAHELRESIQRRFMAGELNCIVATIAFGMGIDKADIRNVV
HYDLPKSVENYSQEIGRAGRDGQPSDCLVLANRDSLSVLQNFVYGDTPEREGIRCVLDEL
LQAGAGGQWELMLNQLSDQSNIRQLPLKTLLVQLELRGIIAPRFAYFAEYRFKYLLEPEA
LVAKFEGERRQFVEAIVHSSARARTWCTLDFDALYQQHGADRARVVKALEYFQEKGWIEL
ESKQMTEVYALLDTGFDAEALSAELHAYFKQHEASEITRIDNMLALFESAECLSQRLAAY
FGDRQAPQHCGHCSVCRGQVAHLPEPPTLAPLDQTDLAGRCVEFSQRYMQLKGSAPSTEC
LTRFLCGISVPVFTRLKARQLPGFASLEAYPYAEVRARLTR
NT seq
1926 nt
NT seq
+upstream
nt +downstream
nt
atgatcgagcagaccctcgtccagacattcggctacgaccgcttccgtaccggccaggag
caggccattcgcgctgtggtggccggccgctcggtggcggcgatctttccaaccggctcc
ggaaaatccctgtgctaccagctgccggcgctgctgttgccgcatctgaccctggtggtc
tcacccttgttggcactgatgcaggaccagctggcgttcctgcaccggcacggcattgcc
gccgccagcatcgactcggcgcagagccgcgagcaggccagcgagaccatggcgcgcgcc
aagtccggcgagctgaagatcctgatgatttcggtggagcggttgaagaacgagcgcttt
cgcaatttcatcagccaggtgccgatctcgctgctggtagtggacgaggcgcactgcatc
tccgagtgggggcacaacttccggccggattacctcaagctccccgactaccagcgtcag
ttcaacattccccaggtgctgctgctgaccgccacggcgacgccgccggtgatcgccgac
atgcagggcaaattcgcgattgccgcggatgacgtggtcaccaccggcttctaccggccc
aacctcaatctgctggtggagccggtcagcggcttcaacaagcagcgccggctggtggaa
tggctgggcgacaagagcggccagcccaccatcgtctacgtcacccagcagaagaccgcc
gaacagattgccgagcacttggcgcagcgcggttttccggccagcgcctatcacgcgggt
atggcgcacgagctgcgcgaatcgatccagcgccgcttcatggccggcgagctgaactgc
atcgtcgccaccatcgccttcggcatgggcatcgacaaggcggacatccgcaacgtggtg
cactacgacctgcccaagtcggtggagaactacagccaggagatcggccgagccgggcgc
gacggacagccgtccgactgcctggtactggccaatcgcgacagcctcagcgtgctgcag
aacttcgtctacggcgatacgccggagcgcgagggcatccgctgtgtgctcgacgagctg
ctgcaggccggcgccggcgggcagtgggagctgatgctcaatcagctatcggaccagagc
aatattcgccagctgccgctgaaaaccctgctggtgcaactggagctgcgcggcatcatc
gcgccacgcttcgcctacttcgccgaataccgcttcaagtacctgctcgaacccgaggcg
ctggtggcgaagttcgaaggcgagcggcggcagttcgtcgaggccatcgtgcacagctcg
gcgcgggcacggacctggtgcacgctggatttcgacgcgctttatcagcaacacggcgcc
gaccgcgcgcgggtggtcaaggcgttggagtacttccaggaaaagggctggatcgagctg
gagagcaagcagatgaccgaggtctatgcgctgctcgacacgggcttcgatgccgaagct
ctgagcgccgagctgcacgcctatttcaagcagcacgaagccagtgaaatcacccgcatc
gacaacatgctggcgctgttcgaatccgccgaatgcctgagccagcggctggccgcctat
ttcggtgatcgccaggcaccacagcactgcgggcattgctcggtctgtcgtggacaggtc
gcgcacctgccggaaccgccgacgctggcgccactggatcaaacggacctggccggccgc
tgcgtcgaattcagtcagcgctacatgcagctaaagggcagcgcgcccagcaccgaatgc
ctgacacgttttctctgcggcatcagcgtaccggtgttcaccaggctcaaggcgcggcag
ctccctggtttcgcctcgctggaggcctatccctacgccgaggttcgcgcgcggctgacg
cggtag
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