Stutzerimonas stutzeri RCH2: Psest_4098
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Entry
Psest_4098 CDS
T02391
Name
(GenBank) DNA/RNA helicase, superfamily I
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
psh
Stutzerimonas stutzeri RCH2
Pathway
psh03420
Nucleotide excision repair
psh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
psh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Psest_4098
03430 Mismatch repair
Psest_4098
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psh03400
]
Psest_4098
Enzymes [BR:
psh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Psest_4098
DNA repair and recombination proteins [BR:
psh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Psest_4098
MMR (mismatch excision repair)
Other MMR factors
Psest_4098
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_30
AAA_11
AAA_22
DUF3553
Motif
Other DBs
NCBI-ProteinID:
AGA88568
UniProt:
L0GPA0
LinkDB
All DBs
Position
4276731..4278920
Genome browser
AA seq
729 aa
AA seq
DB search
MHDDLSLLLNSLNDAQRQAVAAPLGRQLVLAGAGSGKTRVLVHRIAWLNQVERASLHSIL
SVTFTNKAAAEMRQRIEQLLHVNPQGMWVGTFHGLAHRLLRAHWQEAKLAQNFQILDSDD
QQRLVKRVIRELGLDEQRWPARQAQWWINAQKDEGLRPRNIQPGGDLFLATQLKIYEAYE
EACARAGVIDFSELLLRALDLWRDHPGLLEHYQRRFRHVLVDEFQDTNAVQYAWLRLLAK
GGESLMVVGDDDQSIYGWRGARIENLHQFSQDFPDAETIRLEQNYRSTACILKAANALIA
NNQGRLGKELWTSGCEGEPISLYAAFNEHDEARYVVESIEKAIRDGMSRSEIAILYRSNA
QSRVLEEALLREKIPYRIYGGQRFFERAEIKNAMAYLRLIQTRDNDAALERVINVPARGI
GEKTVECLRQLAREQGLSMWAALHQAVGTKAVSGRAASALNGFVELVDTLALKVEGMQLH
NMAQLVIEQSGLLAYHRDEKGEKAQARVENLEELVSAARAFDSYSEEDDDIQSPLAAFLD
HASLEAGEQQAGDHEDSVQLMTLHSAKGLEFPLVFLVGMEEGLFPHKMSLEESGRLEEER
RLAYVGITRAMQQLVITYAETRRLYGSETYNKISRFVREIPPALVQEVRLSNTVTRSFNG
KSMSGSSLFDGAGVPETPFSLGQRVRHSLFGEGTILNFEGSGAQARVQVNFEDEGSKWLM
LSYAKLEAL
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atgcacgacgatctctctctcctcctgaattccctcaacgatgctcagcgccaggccgtg
gccgcgccgctgggacgtcaactggtattggctggcgctggctcgggcaagacccgcgtg
ctggtgcaccggatcgcctggctgaatcaggtcgaacgcgcctcgctgcactcgatcctg
tcggtgaccttcaccaacaaggctgccgccgaaatgcgccagcgtattgagcagttgctg
cacgtgaacccgcagggcatgtgggtcggcaccttccacggcctggcccaccgcctgttg
cgcgcgcactggcaggaagccaagctggcgcagaacttccagattctcgactccgacgac
cagcaacgcctggtcaagcgggtgatccgcgaactcggcctcgacgagcagcgctggccg
gcacgccaggcgcagtggtggatcaacgcgcagaaggacgaaggcctgcgcccacgcaac
atccagcccggcggtgatctgttcctcgccacacagctgaagatctacgaagcctatgaa
gaggcctgcgcccgcgctggcgtcatcgacttctccgagctgctgctgcgtgcgctggat
ctgtggcgcgaccaccccggcctgctcgagcactatcagcggcgcttccgccatgtgctg
gtcgacgagtttcaggacaccaacgccgtgcagtacgcctggctgcgcctgctggccaag
ggcggcgaaagcctgatggtggtcggcgacgacgaccagtcgatctacggctggcgtggc
gcgcgcatcgagaacctgcatcagttcagccaggacttccccgacgccgaaaccatccgc
ctggagcagaactaccgctccaccgcctgcatcctcaaggccgccaacgcgctgatcgcc
aacaaccagggccgtctcggcaaggaactctggacctccggttgcgagggcgagccgatc
agcctgtatgccgccttcaacgagcacgacgaagcgcgctacgtggtcgagagcatcgag
aaggccattcgcgacggcatgagccgcagcgagatcgccatcctctaccgctccaacgcc
cagtcgcgggtgctggaagaggcgctgctgcgcgagaagattccctaccgcatctatggc
ggccagcgcttcttcgagcgcgccgaaatcaagaacgccatggcctacctgcgcctgatc
cagacccgcgacaacgacgcggcgctggagcgggtgatcaacgtgccggcccgtggcatc
ggtgaaaagaccgtcgaatgcctgcgccagctggcgcgcgagcaaggcttgtcgatgtgg
gcggcgctgcatcaggcggtcggcaccaaggcggtttccggccgcgcagccagcgcgctg
aacggcttcgtcgagctggtcgataccctggcgctgaaagtcgaaggcatgcagctgcac
aacatggcacagctggtcatcgagcagtccgggctgctggcctaccaccgcgacgaaaag
ggtgaaaaagcccaggcgcgggtggaaaaccttgaggaactggtctccgctgcacgcgcc
ttcgacagctacagcgaagaggatgacgacatccagtcaccgctggccgcctttctcgac
cacgcctcgctggaggccggcgaacagcaggccggcgaccacgaggacagcgtgcagctg
atgaccctgcacagtgccaagggtctggagtttccgctggtgttcctggtcggcatggaa
gaaggcctgttcccgcacaagatgagcctggaggagtccggccgtctggaagaagaacgt
cgcctggcctatgtcggcatcacccgcgccatgcagcagctggtgatcacctacgccgag
acccgccggctctacggcagcgagacctataacaagatctcgcgcttcgtccgcgaaatc
ccgccggcgctggtgcaggaagtccgcctgagcaacaccgtaacgcgctccttcaacggc
aagagcatgagcggctcgtcgctgttcgacggtgccggcgtgccggaaacaccgttcagc
ctcggccagcgcgtgcgtcattcgctgttcggcgaaggcaccatcctcaacttcgaaggc
tccggcgcccaggcgcgggtgcaggtgaatttcgaggatgagggcagcaaatggctgatg
ctcagttacgcaaaacttgaagccctatga
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