Planococcus shenhongbingii: QWY16_12640
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Entry
QWY16_12640 CDS
T10307
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
pshe Planococcus shenhongbingii
Pathway
pshe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pshe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QWY16_12640
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pshe03019
]
QWY16_12640
Messenger RNA biogenesis [BR:
pshe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
QWY16_12640
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
DUP
Motif
Other DBs
NCBI-ProteinID:
WKA57346
LinkDB
All DBs
Position
complement(2548323..2549990)
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AA seq
555 aa
AA seq
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MSKIKNELIRVIPLGGVGEIGKAMYVVEIDEDLFVVDSGLMFPENEMLGIDIVIPDISFL
EENKDRVKGIFLTHGHEDAIGSIAYLLKKIQAPVYGSKLTIALAKEHIKEQGSLKHVKFF
EVTNKSRMNFDKTHVTFFHTTHSIPDALGIVFHTSEGAIVHTGEFKFDQSAKGSYKPDIA
KMAKLGEDGVLILLSDSTEAERPGHTTPETVVADHLLSAFLAAEGRILVSLYSSNFIRIQ
QVFDIAKATGKKVAVVGKSLESSYEVGLRLGYLEVDEETVISVKELEQYRDEEVVIIVTG
NQGEPLEALDKMVRKQHKDVKIKDTDTVMITFTPSPGMEVQMFQTMNKLAKAGANVLTSS
KKVHVSGHGSQEDLKMMLNMMKPKYFIPIQGEYKMLIAHSKLAQQIGMHKSDIFIADKGD
IVEYKGGKVRMSGRVTAGNVLIDGIGIGDVGNIVLRDRKLLSQDGIFIVVVTLNRKEKKI
ASGPEMISRGFVYVRESEQLMEESTQLVRKIVEKYVVKDAFEWNNIKQEIRDTLNSYLFQ
QTKRRPMIIPIIMEY
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
ttgagtaaaataaaaaatgaattaattagagtgattccgcttggcggagttggagaaatc
ggtaaagcgatgtatgtcgtcgaaatcgatgaagatttatttgtcgtcgacagcggcttg
atgttcccggaaaatgaaatgcttggcatcgatattgttatcccagacatatcatttcta
gaggaaaacaaagaccgtgtgaaagggattttcctgactcatggccatgaagatgcaatt
ggatcaattgcatatttgctgaaaaaaatccaggcgccagtttatggatctaaattgacc
atagctttagcgaaagagcatattaaagaacaaggttcactgaagcatgtgaaatttttc
gaagtgacgaacaaaagccgcatgaattttgataaaactcatgtgacgtttttccacaca
acacatagtattccggatgcgcttggaattgtcttccacacatcggaaggcgctattgtc
catacgggagaattcaagttcgaccaatctgcaaaaggaagctataagcccgatattgct
aaaatggcaaaattgggagaagacggcgtcttgattttgctgtcagactctacagaagcg
gaacgcccagggcatacaactcctgaaacagttgtggcagaccatttattgtctgcattc
ctggcagctgaaggccgtattttagtatcgctgtattcatccaacttcatccggatccag
caagtattcgatattgccaaagctacagggaaaaaagtggcagtggttgggaaaagcctt
gaaagcagctatgaagtcggattgcggctcggctatttggaagtcgatgaagagactgtc
atttcggtaaaagagcttgagcagtaccgagatgaagaagtcgtgattatcgtaacaggc
aaccaaggtgaaccgcttgaagctttggacaaaatggtgcgtaaacagcataaagatgta
aaaatcaaagacaccgacacagtgatgatcacctttacaccgtctccaggcatggaagtc
cagatgttccagacaatgaacaaattggcgaaagccggagcgaatgtactgacatcgagc
aagaaagttcacgtatccggacacggaagccaggaagacctgaagatgatgctgaacatg
atgaagccgaaatacttcatcccaatccaaggggaatacaaaatgctgattgcccattcg
aaattggcacagcaaatcggtatgcataagtcggatatctttattgcagataaaggggat
atcgtcgaatacaaaggcggaaaagttcgtatgagcggccgtgttactgccggcaatgtg
ctgattgacggaatcggaatcggagatgttggcaacattgttcttcgggaccgcaaactt
ctttcgcaagacggcatctttattgtagtggtaacattaaaccgcaaagaaaagaaaatt
gcatccggacctgaaatgatttcccgcggctttgtttatgtccgcgaatcagagcagctt
atggaagaatccactcaattggtccgtaaaattgtcgagaaatatgtggtgaaagacgct
tttgaatggaataacatcaaacaggaaattcgtgacacactgaattcttatttattccaa
caaacaaaacgccgtccgatgatcattccgattattatggaatattaa
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