Planococcus shenhongbingii: QWY16_13435
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Entry
QWY16_13435 CDS
T10307
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
pshe Planococcus shenhongbingii
Pathway
pshe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pshe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QWY16_13435
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pshe03019
]
QWY16_13435
Messenger RNA biogenesis [BR:
pshe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
QWY16_13435
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
DUF4453
CFAP54_N
Motif
Other DBs
NCBI-ProteinID:
WKA57497
LinkDB
All DBs
Position
2710401..2712068
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AA seq
555 aa
AA seq
DB search
MKFVKNDQTAVFALGGLGEIGKNTYGVQFQDEIILIDAGIKFPEDDLLGIDYVIPDYTYL
VKNMDKIKGLFITHGHEDHIGGIPYLLKKINIPVYGGKLALGLLRKKLEEHGLLRQTKMI
EIEEEDIIKFRKTSVSFFRTTHSIPDAFGVVVKTPPGNIVHTGDFKFDFTPVGEPANLLK
MAQIGSEGVLCLLSDSTNAEVPNFTMSERKVGESIKDIMRKVDGRLIFATFASNIYRLQQ
VTDEAVAQGRKIAVFGRSMDNAMTIGRELGYINAPEDAFVDTQTLNRLPANEVLILCTGS
QGEPMAALSRIANGTHRQIQIQPNDTVVFSSSPIPGNTSSVNRTINLLFRAGADVIHGSL
NNVHTSGHGSQPENKLMLRLIKPKFFMPIHGEYRMQKMHAQLAVDCDVPEENTFIMENGD
VLALSQDEAAVAGRIPSGDVYIDGSGIGDIGNIVLRDRRVLSEEGLVIVVVSVNMEKNKM
VSGPDIISRGFVYMRESGTMIYEAQQMLNRHLNKKIHGKNTEWAELKGDISDVLGPYLYE
KTKRRPMILPIIMEV
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgaagtttgtaaagaatgaccaaactgccgtcttcgcccttggcggactaggggaaatc
ggcaaaaacacgtatggcgtccaatttcaggatgaaattatcctgattgatgccggcatt
aaatttccggaagacgatctgctcgggatcgattacgtaattccggattatacttaccta
gtaaaaaatatggataaaattaaaggcctatttatcactcacggccatgaagaccatatt
ggcgggattccttaccttttgaaaaaaatcaatattcccgtttacggaggcaaacttgca
ttaggcttgctgcgtaaaaaattggaggagcatggtttgcttcgccaaacaaagatgatt
gaaatcgaagaagaagatatcatcaaattccgtaaaacttcggtcagctttttccgtact
acccatagtattcccgacgctttcggtgtggttgtcaaaactcctcccggaaatatcgtg
cataccggagatttcaaattcgatttcactccggtaggcgaaccagctaacctcttgaaa
atggcgcaaatcggcagtgaaggcgttttatgtttattgtcggacagcacgaatgctgaa
gtaccgaacttcaccatgtcagagcgcaaagttggcgaatccatcaaagatattatgaga
aaagtggatggccgcttgattttcgccactttcgcttccaatatttaccgattacaacaa
gtcacagacgaagctgttgcccaaggccgtaaaattgccgttttcggacgcagcatggat
aatgccatgactatcggccgtgaacttggatacatcaatgcaccggaagacgcttttgtt
gatactcagactttgaatcgccttccggcaaacgaagtgctgattctttgcactggttca
caaggtgaaccgatggctgcgctctcacggattgcaaacggtacccaccgccagatccag
attcagccaaacgatacggtcgtcttctcttcttccccgattccgggcaatacgagcagc
gttaaccgtaccatcaatttgcttttccgtgcaggtgcagacgttattcacggctcttta
aataatgtccatacttccggtcatggctcacagcctgagaacaaattgatgcttcgtttg
atcaaaccgaaattctttatgccgatccacggtgaataccggatgcagaaaatgcatgct
caattagcagtggactgtgatgttcctgaagaaaatacgttcatcatggaaaatggcgat
gtgttggctttaagccaggatgaagctgcagttgccggccgcataccttccggcgatgtt
tacatcgatggaagcggaatcggagacatcggcaatattgtacttcgcgaccgccgcgtc
ctttctgaagaaggattagtgattgttgtggtcagtgtcaatatggaaaaaaataagatg
gtgtcgggtcctgatatcatttcacgcggttttgtttatatgcgtgaatccggcacgatg
atttatgaagctcagcaaatgctgaaccgtcacctgaacaaaaaaatccatggcaaaaac
acggaatgggccgagctgaaaggcgatatttctgatgtccttggaccgtatttgtatgaa
aaaactaaacgccgtccaatgattctgccaatcatcatggaagtctaa
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