Planococcus shenhongbingii: QWY16_17860
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Entry
QWY16_17860 CDS
T10307
Symbol
helD
Name
(GenBank) RNA polymerase recycling motor HelD
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
pshe Planococcus shenhongbingii
Pathway
pshe03420
Nucleotide excision repair
pshe03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pshe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
QWY16_17860 (helD)
03430 Mismatch repair
QWY16_17860 (helD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pshe03400
]
QWY16_17860 (helD)
Enzymes [BR:
pshe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
QWY16_17860 (helD)
DNA repair and recombination proteins [BR:
pshe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
QWY16_17860 (helD)
MMR (mismatch excision repair)
Other MMR factors
QWY16_17860 (helD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_22
DEAD
PhoH
SLFN-g3_helicase
AAA_30
AAA_16
NACHT
ResIII
AAA_11
Motif
Other DBs
NCBI-ProteinID:
WKA58338
LinkDB
All DBs
Position
3692923..3695259
Genome browser
AA seq
778 aa
AA seq
DB search
MDSEFQLEQKRVDGVIGTITDQISSLETETSQRRNELVDIRRHFWDEIKVNVDSFDDYLE
TIIGLRQEAQILSTNQSTERLASQKLAKLRRMQEVPYFGRIDFLEEGEAAAEQVYIGIST
LMDASGENFLVHDWRAPVSSVYYEYQTGPASYSTPGGEVEGALEKKVQYLIRGGVLQSMF
DTSLTIGDEILQQVLGKGTDKQMHSIVATIQQEQNRIIRHDRGKLLIVQGAAGSGKTSAA
LQRIAYLLYKYRTHLNPDQIILFSPNSMFNSYVSNVLPELGEENMQQVTFQEYLDHRLGE
EFQLENPYAQLEYVFTAAHTPAYNSRVSGIRFKASRSFFEALESYRKSLERSGMQFKDIN
FRGKPVVTAQQIADRFYSSDTSLRFHNRLEKLKGWLLKKINDRQKDELDESWVQDRIELL
SNDDYHKARVYLAKKQGLKSEEMSDFEVKPEALARLIVQQKFKPLRKRVRAFGFIDIKGL
YRQLFADLKQISQWIDGETPAEWPEICQATLEMLDEGRLSYEDATPFLLMKELIQGFQAN
SSIKHVVVDEAQDYSPFQFEFLKRLFPSAKMTVLGDFNQAIFVHASETDDFHMLMNLYGP
EETEVINMARSYRSTKPIIEFTRRLIPNGDRIIPFERDGERPVLTQVADHAELHRCIVSK
VAALRKLRYNSIAIICKSLEESKRAYEALSGIEGIKLLKSGTAEYEQGIVVIPSYLAKGI
EFDAVIIYDASRQVYGDDSLRRVFYTACTRAMHELQLYSVGEPMPMLQNVLQESSVQD
NT seq
2337 nt
NT seq
+upstream
nt +downstream
nt
atggattcagagtttcagctggagcaaaaacgagtggacggtgtcatcgggaccataacg
gaccagatcagcagtttagagacagaaacgtctcagcgccggaacgaactggtggatata
cgcagacatttctgggatgaaatcaaagtgaatgttgacagcttcgacgattatctggaa
accattatcggcttgaggcaagaagcgcaaattttatcgacaaaccaaagcactgaacgg
ctggcgtcccagaaattggccaagcttcggcgtatgcaggaagtcccttactttggccgc
atcgatttcctggaagaaggagaagctgctgcggaacaggtctatattggaatttccacg
ctgatggatgcaagcggcgaaaatttccttgtccacgactggagagcgccggtctcgagt
gtctactatgaataccagacgggaccggccagctattcaactcccggcggtgaagtcgaa
ggggcattggagaaaaaagtgcaatacttgattcgcggcggtgttctgcaatcgatgttc
gacacgagcctgaccattggagatgagattctgcagcaggtgcttggcaaaggcactgac
aaacagatgcacagtatcgtagcgaccattcagcaggagcaaaaccggatcatccgccat
gatcgcggaaagctgcttattgtccaaggcgcagccggcagcggcaagacatcggctgcc
ctgcagcggatcgcttatttgctctataaataccggacccacctgaatccggatcaaatc
atcctgttttcgccgaattcgatgttcaatagttacgtctccaatgtgctgccggaactc
ggcgaagaaaatatgcagcaagtcaccttccaggaatacctggaccaccggctaggcgaa
gagtttcaacttgaaaatccctatgcacaattggaatatgtcttcacggctgcacacact
cctgcctataattcaagagtttcgggcatccgctttaaagcctcccgctcttttttcgaa
gcgctcgaatcttatcggaagtcgctggaaagatccggcatgcaattcaaggacatcaat
ttcagaggaaaaccggttgtcaccgcccagcaaatagcggaccgcttttacagcagcgac
acttccctccgtttccataaccgccttgaaaaattgaagggctggctgctgaagaaaata
aatgaccggcaaaaggacgaacttgatgaatcctgggtacaggacagaatcgagctgctc
agcaatgatgattaccataaagcccgggtctatttagcgaaaaaacaaggactcaaaagt
gaagagatgtccgatttcgaggtcaaaccagaagctcttgcccggttgattgtccagcag
aaattcaagccattgcgcaaacgcgtcagggcgtttggctttattgacattaaagggctg
taccggcagctgtttgctgatctcaagcaaatcagccagtggatagatggggaaactccc
gcggaatggccggagatttgccaagcgacgttggaaatgctcgatgaaggcagattgtct
tacgaagatgctacgccgttcttgctgatgaaggaattgatccagggctttcaggccaat
agctcgatcaaacacgtggttgtcgacgaagcgcaggattattccccgtttcaattcgag
tttctgaagcgtctatttccgtcggcaaaaatgacggtgcttggtgacttcaaccaagcg
atatttgtccatgcaagcgaaacggatgactttcacatgctgatgaatttatacgggccg
gaggaaacggaagtgatcaacatggcgcgcagctaccgctccaccaagccgattattgaa
tttacacgtcggctcattccgaatggcgaccggattattcctttcgaacgcgacggcgag
cggcccgtactgacacaagtagccgatcatgccgaactgcatcgctgcattgtctctaaa
gtcgcggctctgcggaagctccgttataacagcatcgccatcatctgcaaatcactcgag
gaaagcaaacgcgcctacgaagctctgtccggtattgaaggcatcaagcttttaaagagc
ggcacagctgaatacgagcagggaattgtggtcatcccgtcgtatttggccaaaggcatc
gaattcgatgcggtcatcatttatgacgcatcccggcaggtttacggcgatgacagcctc
cgccgagtgttttatactgcctgcacccgggcgatgcatgagctgcagctttacagtgtc
ggtgaaccgatgccgatgctgcaaaacgtcctgcaggaaagttcagtccaagattga
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