Pseudomonas shahriarae: HU773_001360
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Entry
HU773_001360 CDS
T07642
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
pshh
Pseudomonas shahriarae
Pathway
pshh03030
DNA replication
pshh03410
Base excision repair
pshh03420
Nucleotide excision repair
pshh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pshh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HU773_001360 (polA)
03410 Base excision repair
HU773_001360 (polA)
03420 Nucleotide excision repair
HU773_001360 (polA)
03440 Homologous recombination
HU773_001360 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pshh03032
]
HU773_001360 (polA)
03400 DNA repair and recombination proteins [BR:
pshh03400
]
HU773_001360 (polA)
Enzymes [BR:
pshh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HU773_001360 (polA)
DNA replication proteins [BR:
pshh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HU773_001360 (polA)
DNA repair and recombination proteins [BR:
pshh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
HU773_001360 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HU773_001360 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
Motif
Other DBs
NCBI-ProteinID:
QXH89562
LinkDB
All DBs
Position
287745..290540
Genome browser
AA seq
931 aa
AA seq
DB search
MSQAPLVLVDGSSYLYRAFHALPPLTTSKGLPTGAVKGVLNMLKSLRKQYPDSPFAVVFD
AKGGTFRDDMYAEYKANRPSMPDDMRVQIEPLHQSVIALGFPLLCVEGVEADDVIGTLAR
SSAAADRPVVISTGDKDMAQLVDGHITLVNTMTGSAMDVDGVKEKFGVAPEQIIDYLALM
GDSSDNIPGVPGIGPKTASGLLVGVNGGLKELYEQLDIVPSLPIRGAKTLPAKLEEHKEM
AFLSYQLATIKVDVPLDVGLEDLHLIEPDREKLLELYTLLEFKSWIDEIQRDAKRVELKA
AADVAPAQVAVAAQAPVAPVEAQYETILDQARFDVWLKKLNDAKLFAFDTETTGVDAQQA
QLVGVSFAVQANEAAYIPLTHSYIGVPEQLDRDTVLLALKPLLEDPNKLKVGQHAKFDMN
ILANCAIGGDPAHGITVRGIAFDTMLESYVLNSTATRHDMDSLAKKYLEHDTVSFQDIAG
KGAKQLTFDQIALEQAGPYAAEDADVTLRLHLALYEQLCALPSLASVLTDIEMPLVPVLA
RIERQGALVDAALLGVQSIELGNKMVELERQAYEIAGEEFNLGSPKQLGAILYEKLGLPV
LKKTGKGQASTAEEVLAKLAEDDYPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRIHT
SYHQAVAATGRLSSSDPNLQNIPVRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHL
SKDEGLLNAFRDNLDVHTATAAEVFKVELGEVTSDQRRSAKAINFGLIYGMGAQKLGKDI
GVDTKTAKAYIDVYFARYPGVREYMERTRAQASDQGYVETLFGRRLYLPDIHSNKPQERA
GAERTAINAPMQGTAADIIKKAMVKVDNWLTESGLDAKVILQVHDELVLEVREDLVAEVS
EKIREHMSGAASLDVPLLVEVGVGDNWDQAH
NT seq
2796 nt
NT seq
+upstream
nt +downstream
nt
atgagccaagcccccctcgtcctggtggacggttcttcatatctgtaccgcgccttccac
gcgctgccgccgctgactacgtccaaaggcctgccgaccggtgcggtcaagggcgtgttg
aacatgctcaaaagcctgcgcaagcagtacccggacagtccgttcgcggtagtgttcgac
gccaagggcgggacatttcgcgatgacatgtacgccgaatacaaggccaaccgcccgagc
atgcccgatgacatgcgcgtgcagatcgagccgctgcaccagagcgtgatcgccctgggc
ttcccgctgctgtgtgtcgaaggtgtcgaggccgacgacgtgatcggcaccctggcccgc
agcagtgcggctgccgaccgcccggtggtgatctccacgggtgacaaggacatggcgcag
ttggtcgatgggcacattaccttggtcaacaccatgaccggtagcgccatggatgtggac
ggcgtaaaggagaaatttggtgtcgctcccgagcagatcatcgactatctggcgttgatg
ggcgattcctccgacaacatcccgggtgttcccggtatcggtcctaagaccgcttcggga
ctgctggtcggtgtgaacggcggattgaaagagctctacgagcagctcgatattgtcccg
agcttgccgatccgtggggccaagaccctgccggccaagctggaagagcacaaagagatg
gcgttcctgtcctaccagttggcgaccatcaaggtcgatgtgcccctggatgttggcctg
gaagacttgcacctgatcgagccggatcgcgagaagctgcttgagctgtacaccctgctg
gagttcaagagctggatcgatgagattcagcgtgatgccaagcgggtcgagctcaaggct
gccgctgacgttgcaccggctcaggttgcagttgcggcccaagcgcctgtggccccggtc
gaagcgcagtacgagaccatcctcgaccaggcccgctttgacgtctggttgaaaaaactc
aatgacgcgaagttgtttgcctttgataccgaaaccaccggtgtcgacgcccagcaggcg
caactggtgggggtttcatttgcggtgcaggccaatgaagcggcctacatcccgctcacc
cattcctacatcggcgtgcccgagcaactggaccgcgatacggtgttgttggctctcaag
ccgctgctggaagacccgaacaagctcaaggtcggtcagcacgccaagttcgacatgaat
atcctggccaattgcgccattggcggcgacccggcgcacggcatcaccgtgcgcggcatc
gccttcgacaccatgctcgaatcctacgtgctgaactccaccgcgacccggcacgacatg
gacagcctggcgaagaagtacttggagcatgacaccgtcagctttcaggacatcgccggc
aaaggcgccaaacagctgaccttcgaccagattgccctggagcaggccggtccctacgct
gctgaagatgccgatgtgaccctgcgcctgcacctggccctttacgaacaactctgcgcc
ctgccgagtctggccagtgtgctgacggatatcgagatgccattggtgccggtactggcg
cggatcgagcgccagggtgccctggtagatgccgcgctgctcggcgtgcagagcatcgag
ctgggcaacaagatggtggaactggagcgtcaggcgtatgaaatcgccggcgaggagttc
aacctgggttcgcccaagcaattgggggcaatcctctacgaaaaactcgggctgccggtg
ttgaagaagactggcaagggccaggcctctaccgccgaggaagtgctggccaagctggcc
gaagatgactatccattgcctaaggtgctgatgcagtaccgcagcatgagcaaactcaaa
agcacctacaccgaccgtttgcccgagcagatcaacccgcgcacggggcggatccacacc
tcttatcatcaggccgtggccgctaccgggcgtttgtcgtccagtgatccgaacctgcag
aacatcccggtgcgcaccgccgaaggccggcggatccgccaggcgttcgttgcgcccaag
ggctacaagctgctggcggcggactactcgcagatcgaactgcggatcatggcgcacctg
tccaaggacgagggcttgctcaacgccttccgcgacaacctggatgtacacacggccacg
gcggccgaggtgttcaaggtcgagctgggtgaggtcacgtccgaccagcgccgtagcgcc
aaggcgatcaacttcggcctgatctacggcatgggcgcgcagaagctgggcaaggatatt
ggcgtcgataccaagacggccaaggcctacatcgatgtgtactttgcccgctacccaggg
gtgcgcgagtacatggagcgcacccgtgcccaggcatccgaccagggctatgtggaaacc
ctgttcgggcgccgcctgtatctgccggatatccactccaacaagccccaggagcgcgcg
ggcgcagagcgtaccgcgatcaacgcgccgatgcagggcactgccgccgatatcatcaag
aaagccatggtcaaggtcgacaactggctgacggagtcggggttggacgccaaggtcatc
ctgcaggtacacgatgaattggtactggaggtccgcgaagacctggtggctgaggtcagc
gagaagattcgcgagcacatgagcggtgcggcgagcctggatgtgccactgctggtggaa
gtcggggtgggcgataactgggaccaggcgcactga
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