Pseudomonas shahriarae: HU773_001615
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Entry
HU773_001615 CDS
T07642
Name
(GenBank) retention module-containing protein
Organism
pshh
Pseudomonas shahriarae
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LapA
HemolysinCabind
VWA_2
VWA
Cadherin_3
Motif
Other DBs
NCBI-ProteinID:
QXH89607
LinkDB
All DBs
Position
complement(346783..355080)
Genome browser
AA seq
2765 aa
AA seq
DB search
MSSVVAIVKSIVGQVFVISPEGARRVLVEGDRLFAGDQIDTGMSGAVSLELADGRTLDLG
RDTQWSATAPDSSTDLAQATAQAAPSVAELQQAIAAGADPTTELEATAAGAAAAGTGAAG
GGHSFVMLDETAGSVDPTIGFPTAGLGFGTNALTNELGGQPTDPLTAAPLPSTLSLSATP
TITEAGGVLTYTATVTQPSTSNLTVTLSNGAVITIPAGQVTGSVNVPLAPNDSPYIDPGQ
ISVTVTGTTGGNNLIVTVDPTPAVTQITDTIDTTTVTLTAGETVTEGGQITYTATLTNPA
QTPVTITLSNGSVINIEAGKSTGTVVVETPANDVYNNGSTVSTTITGATGGNFENLVPNT
TPAVTTITDSVDDTGVTLTATNTVTEGGQITYTATLTNPAQTPVTVTLSNGSVITIKAGE
SVGTVVVDTPANDVYVNGSTVTTTITGTTGGNFENLVPNTTPAVTTITDSVDTTTVTLTA
PGDVSEGGQITYIATLSNKADTDVTLKLDNGSTIIIKAGETVGSVTVDAPGDDVFVDKST
QTVKIVETTGGNFEKLEVAGDGATTTVNDTIDKVDVVLTATTTVGEGGNIVYTASLVDKA
GNPVTNTTNPLTVTLDNGQAITIGVGQSAGTATTVAPNDVYEGNQTVTTAITNVTGGAHF
ENLVPGTTPVNTTVTDTPGTTDTTTVTLTAPGEADEGGNITYTATLSNKAGSDLTLTLSN
GDVITIAKGETTGQVTSKAPSDDVFKDAGPINVTINPDIVGGGFEKLDIAPGGATTQIND
TIDKVDVVLTATKTVGEGGEIVYTATLVDKNGAPVTNITSPVTVTLDNNQVITIGVNQSS
GTVSVVAPDDVYKGDQTVTTGIKEVTGGEHFENLVPGTDKVTTTVTDTPGTDNTTTVTLT
APSEVSEGGQITYTATLSNKADTDVTLTLDNKQTITIKAGETVGTVTVDAPGDDVFVDKS
TQTVQITGTDGGNFEKLVVAGNGATTTINDTIDKVDVVLTATKTVGEGGEIVYTATLVDK
NGAPVTNITNPVTVTLDNNQVITIGVNQSSGTVSVVAPDDVYKGDQTVTTGIKEVTGGEH
FENLVPGTDKVTTTVTDTPGTDNTTTVTLTAPSEVSEGGQITYTATLSNKADTDVTLTLD
NKQTITIKAGETVGTVTVDAPGDDVFVDKSTQTVQITGTDGGNFEKLVVAGDGATTTIND
TIDKVDVVLTATKTVGEGGEIVYTATLVDKNGAPVTNITSPVTVTLDNNQVITIGVNQSS
GTVSTTAPDDVYKGDQTVTTGIKEVTGGEHFENLVPGTDKVTTTVTDTPGTDNTTTVTLT
APSEVSEGGQITYTATLSNKADTDVTLTLDNKQTITIKAGETVGTVTVDAPGDDVFVDKS
TQTVQITGTDGGNFEKLVVAGDGATTTINDTIDEVRVVLTATANVAEGGQIVYTASLVDK
NGAAVTNVGSDLVIKLDNDLIITIGNGKTSSTANFTAPNDFYVGAKDISAKITNVVSGGD
KYENLIPVGTPVVTKVTDVTSNTVISIAGDTSVTEGQTAHYTLNLTQPAATEVTVTLSYK
GVAQDGSDFNGVYTVKIPAGQSTATFDIKTIDDKLTEPTEKFEISISGTSGGNFENLVVS
TTNGKIETSIIDNDAPPTIDLDANNSSGATGNDFKTTFTEGGTGVSIADTDIRITDPDST
QLTGATVVLTNTQPNDLLDYSKVSGMNVTSVTDPVTGKITLTLTGTASLADYMQQIKNIT
FSNSSDDPSTTPRTITVTVTDGGNYSNVATTTVNVVAVNDAPVATGGAVTGTEDTSLKLT
WANFGVTDVDSPQASLGVKITELPVAGKLQYLAADGTTWTNVTAGQTFTKAQIDGGQLRF
TPNANESGADGYGGTGVGNKQADYAQFKFQPTDGKDLGTSATVKVDITPVADAPTLSVAD
NNIASVGLTKQSWNSIANLGTNGNGATPTALKNAIDNAGTPNSTTLSTNVESTANVPAGA
GSKTSGLIYLEAGKAYTFSGYADDSLLIRIGGKDVASGTWGSNSGQFSGTFTPTSNGYYS
IDIYHANQSNAGGYDVNLSINGGAATNLSNTNIPIYTGVNDLINAGAQVSDLHGTNGQGY
YDAYKLNEGLENGTVKLTKVTTGLTDTDGSETLSVKIGSIPVGAVLSDGAGHTFTATNGH
TEVNVTGWDLNNLSLKPLPYTSGQYNLTVTSTSTESLGGSATTVANVPVKVYPATYSGST
ATSGDDNVTGSSGNDIIVADVSGLNVVQGKNYNIAFMIDTSGSMGSDSVAAAKASLTTVF
NSLKNSIGSSTSGTVNIFLADFSDQVNRTVTVNLKDPGALDALQKVLDKMVSTGGTNYED
VFKAASNFFKSGQATGNKDAINTTYFITDGQPTYYQRYEQTNPSLYGNVKLDDVVNMSNY
TLGTATRITIDSEHYLDINTVGTVTLGTYNWWGWGQSNLGTIHAQGDGTYELSSVGGNGT
ASSSNINDPTLISNSQNAFALLKGLSTGGVEAIGLNSGISLNQLAPYDSDNKPQSNIDPK
DLANAILGHSEATLPGADRVDGGDGNDILFGDLVSFPGITGEGYNAIQTYVAGKNGVAVA
AVTGQDVHKYITEHYTEFNTSGAKDGNDTLLGGSGDDILFGQGGNDYLDGGKGNDILLGG
TGNDTLIGGQGNDILIGGTGADTFVWRSGDVGNDVIKDFKASEGDRIDLRDLLKGETDST
IDNFLKLTTVDNVTTLQISSEGKLNADGGLANADVTIKLEGNNWSGQSINSLITGADPTI
KVDHS
NT seq
8298 nt
NT seq
+upstream
nt +downstream
nt
atgagcagtgttgttgccatcgtcaaaagcattgttggccaagttttcgtcatttctccg
gaaggggcccgccgggtgcttgttgaaggtgatcgcctttttgccggcgaccagatagac
accgggatgtcgggcgcagtcagcctggagctggccgatggtcgcaccctggacctgggc
cgtgacacccagtggagcgccaccgcgcccgactccagcacggacctggcacaagccacc
gcacaggctgcaccgtcggttgccgaactgcagcaggcaatcgccgccggcgctgacccg
accaccgagctggaagccaccgccgcaggcgcggcagctgctggcaccggcgctgcgggg
ggcggtcacagctttgtgatgctcgatgagaccgcaggctcggttgatccgaccattggt
ttcccgacggctggcctgggtttcggtaccaatgcgttgaccaacgaactcggcgggcag
ccgaccgacccgctcacggcagcacctttgccgtcgaccctgtccctgagcgccaccccg
accatcaccgaagccggcggcgtgctgacctacaccgctacggtgacccagccgtctacc
agcaacctgaccgtcaccctgtccaacggcgcggtgatcaccatcccggccggccaggtg
actggctccgtgaatgtgcccctggcgcctaatgacagcccgtatatcgacccaggccag
atcagcgtcaccgtcactggcaccaccggcggtaacaacctgatcgtgaccgtcgacccg
acgccggccgtcacccagatcaccgacaccatcgacaccaccaccgtgaccctgacagca
ggcgaaacggtgaccgaaggcggtcagatcacctacaccgcgaccttgaccaacccggcg
cagacgcccgtcaccattaccttgagcaacggctcggtgatcaacatcgaggcaggtaag
tccaccggtacagtggtggtcgagacaccggccaacgacgtctacaacaatggcagcacg
gtcagcaccaccatcaccggggcaaccggtggcaacttcgaaaacctggtgcccaacacc
acaccagccgtcaccacgattaccgattcggtcgacgacaccggcgtgaccctcaccgcc
actaacaccgtcaccgaaggaggccagatcacctacaccgcgacgctgaccaacccggcg
caaaccccggtgaccgtgaccttgtccaacggctcggtgatcaccatcaaggccggcgag
tccgtcggtaccgtggtggtcgacactccggcgaacgacgtctacgtcaacggcagcacc
gtcacgacgaccatcactggcacgaccggtggcaactttgaaaacctggtgcccaacacc
acgccagccgtcaccaccatcaccgattcggtcgacaccaccaccgtaaccctgactgcg
ccaggcgatgtcagcgaaggcggccagattacctatatcgccacgctttccaataaagcc
gacactgacgttacgctgaagctggataacggttcgaccatcatcatcaaggcgggtgaa
accgtcggctccgtcaccgtcgatgctccgggcgatgatgtgtttgtcgacaaaagcacg
caaaccgtaaagatcgtcgagactactggcggcaacttcgaaaaactggaagtggccggt
gacggcgctaccaccaccgtcaacgacactatcgacaaggtcgatgtggtcctgactgcg
actaccaccgtgggcgaaggcggtaatatcgtctacaccgcgtcgctggtggacaaggca
ggtaacccggtcactaacaccaccaatccgttgaccgtgacgctggacaatggccaggcc
atcaccattggtgtcggccagtccgctggcactgccaccactgttgcgccgaacgacgtg
tatgagggcaaccagaccgtcaccaccgctatcaccaatgtgaccggcggcgcgcatttc
gagaacctggtaccgggcaccacgccggtcaacaccaccgtgaccgacacacccggcacc
accgacaccaccaccgtcaccctgaccgcaccaggcgaggccgacgaaggtggcaacatc
acctacaccgcgaccttgagcaacaaggccggcagcgacctgaccctgaccttgagcaat
ggtgacgtgatcactatcgccaagggcgagacgacaggccaggtgacgtccaaggcaccg
agcgacgacgtattcaaagatgcaggtccgatcaacgtcacgatcaatccggacatcgtg
ggtggtggcttcgagaagcttgatatcgcaccgggtggggcgacgacgcagatcaacgac
actatcgacaaggttgatgtggtactgaccgccaccaaaactgtgggtgaaggcggcgag
atcgtttacaccgctaccttggtggataaaaacggcgcgccggtgactaacatcaccagc
cctgtgaccgtgaccctggataacaaccaggtcatcaccattggtgtgaaccagtcgagc
gggactgtctcggttgtggctccagatgatgtgtacaaaggcgaccagactgttactacc
ggcattaaagaagtcaccggtggcgagcactttgaaaacctggttccaggtactgacaag
gtcaccacgactgtcactgacacaccgggcaccgataacaccacgaccgtgacgctgact
gctccttcggaagtgagtgaaggtggccagatcacttacaccgccaccttgagcaacaag
gctgacactgacgtcaccctgacactcgataacaaacaaaccatcaccatcaaggccggc
gaaaccgtcggtaccgtcaccgttgatgcccctggcgatgacgtgttcgtcgataagagc
acccagactgtccagatcaccgggactgacggcggcaacttcgagaagctcgtggttgct
ggcaatggcgcgactaccaccatcaacgacaccatcgacaaggtcgatgtggtcctgacc
gccactaaaactgtgggcgaaggcggcgagatcgtttacaccgccacccttgtggataaa
aacggtgcgccagtaactaacatcaccaaccctgtgactgtgaccctggataacaaccag
gtcatcaccattggtgtgaaccagtcgagcgggactgtctcggttgtggctccagatgat
gtgtacaaaggcgaccagactgttactaccggcattaaagaagtcaccggtggcgagcac
tttgaaaacctggttccaggtactgacaaggtcaccacgactgtcactgacacaccgggc
accgataacaccacgaccgtgacgctgactgctccttcggaagtgagtgaaggtggccag
atcacttacaccgccaccttgagcaacaaggctgacactgacgtcaccctgacactcgat
aacaaacaaaccatcaccatcaaagcgggcgaaacagtcggcaccgtcaccgttgatgcc
cctggcgatgacgtgttcgtcgataagagcacccaaaccgtccagatcaccgggactgac
ggcggcaacttcgagaagctcgtagtcgctggcgatggcgcaaccacaaccatcaacgac
accatcgacaaggtcgatgtggtcctgaccgccactaaaactgtgggcgaaggcggcgag
atcgtctacaccgctaccttggtagataagaacggcgcgccggtgactaacatcaccagc
cctgtgaccgtgaccctggataacaaccaggtcatcaccatcggtgtgaaccagtcgagc
ggtactgtttcgactacagctccggatgatgtgtacaaaggcgatcagactgttactacc
ggcattaaagaagtcaccggtggcgagcactttgaaaacctggttccgggcactgataag
gtcactacgactgttactgataccccaggtaccgataacactacgaccgtgacgctgacg
gctccgtcggaagtgagtgagggtggccagatcacctacaccgctacgctttcgaataaa
gcggataccgacgtcaccctgacgctggacaacaaacagaccatcaccatcaaggccggt
gaaaccgtcggtaccgtcaccgttgatgcccctggcgatgacgtgttcgtcgacaagagc
acccagaccgttcagatcaccgggactgacggtggcaacttcgagaagctcgtagttgct
ggcgatggcgcaaccacaaccatcaacgacaccatcgacgaggtgagggttgtgctgacc
gccaccgccaacgtcgccgaaggtggccagatcgtctacaccgccagcctcgtggacaag
aacggtgcggccgtgaccaacgtgggttccgacctggtgatcaagttggacaacgacttg
atcattaccatcggtaatggcaagaccagcagtaccgccaacttcaccgcgccgaatgac
ttctacgtgggcgccaaggatatttccgcgaagatcactaacgtggtcagcggtggtgac
aagtatgaaaacctgatcccggtcggtactccggtagtcaccaaggtgacggacgtgacg
agcaacaccgtgatcagtatcgcgggcgatacctcggtgaccgaaggccagaccgctcat
tacacgttgaacctgacccagccggcagccaccgaagtcacggtgaccctctcgtataaa
ggtgtggcccaggacggttcggacttcaacggcgtgtacaccgtgaagattccagccggc
caaagcactgcgacgttcgatatcaagaccatcgacgacaagctgaccgagcctacggag
aagttcgagatcagcatctccggtacctccggcggtaacttcgagaacctggttgtcagc
accaccaacggtaaaatcgaaacgtcgatcatcgataacgatgcaccaccgaccatcgac
ctggatgccaacaactccagcggcgccaccgggaacgacttcaagaccacgttcaccgag
ggcggcactggcgtgtcgattgctgacaccgacatccgcatcaccgacccggacagcacc
caactgactggcgccacggtggtgctgaccaatactcagccgaacgacttgctggactac
agcaaggtcagcggtatgaacgtgacctcggtcacggatcctgtcaccggcaagatcacc
ctgaccctaaccgggacggcgtcgctggctgactacatgcagcagatcaagaacatcacg
ttcagcaacagcagcgacgacccgagcaccacgccacggaccatcaccgtgaccgtgacc
gacggcggcaactactcgaacgtagcgaccaccacagtcaacgtagtggcggtcaacgac
gcaccggttgccactggcggcgccgtcaccggcaccgaagacacatcgctgaagctgact
tgggccaatttcggggtcaccgatgtggattcccctcaggccagcctcggggtgaaaatc
accgagctgccagtcgccggcaagctgcagtacctggcagcggacggcactacctggacc
aacgtgacagccggccagaccttcaccaaggcgcagatcgacggcggccagttgcgcttc
acgccaaacgccaacgaatccggagccgacggctacggcggcaccggtgtgggcaacaag
caggctgattacgcacagttcaagttccagccaaccgatggcaaggacctgggcaccagc
gctaccgtgaaagtcgacatcaccccggttgcggacgcgccgacgttgagcgttgccgat
aacaacatcgcatcggtaggcctgaccaagcagagctggaacagcattgcgaacctgggc
accaacggcaatggcgcgacaccgaccgcactgaaaaatgcgatcgataacgcgggtacg
cctaacagcacgacgctttcgaccaatgtcgagtcgacggccaacgtaccagctggcgcg
gggtcgaaaacctcaggcttgatctatctggaagccggcaaggcctataccttcagcggc
tatgccgatgacagtctcctgatcagaatcggcggcaaagacgtggctagcggtacctgg
ggctcgaactccggccagttcagcggcacgttcaccccgaccagcaatggctactacagc
atcgatatttaccatgcgaaccagtcaaatgccggcggctatgacgttaacctgtcgatc
aacggtggggcggcgacgaacctgagtaataccaacatcccgatctacaccggggtcaac
gacctgatcaacgcaggtgcccaggtgtctgacctgcatggcaccaacggccagggctac
tacgacgcgtataagctcaacgaagggctggaaaacggcacggtcaaactgaccaaggtc
accactggcctgaccgataccgacggctcggaaaccctgagcgtgaagatcggcagcatc
ccggtgggcgcagtgctcagcgatggtgccgggcatacctttacggctaccaatggccat
accgaagtcaatgtcaccggttgggacctcaataatttgagcctcaaaccactgccttac
accagcggccagtacaacctgaccgtgacgtcgacctccaccgaaagcctcggcggctcg
gccacaaccgttgccaatgtgccagtcaaggtgtacccggccacctatagcgggagcacg
gcgacttcgggcgatgacaacgtcaccggtagcagcggcaacgacatcatcgtggcggac
gtttctggcctgaacgtggtccagggcaaaaactacaacatcgcgttcatgatcgatacg
tcgggcagtatgggttcggactcggtagcggcggcgaaagcctcgctgaccaccgtgttc
aactcactgaaaaacagtatcggctccagcacctctggcaccgtgaacatcttcctggcg
gacttcagtgaccaggtcaatcgtacggttacagtcaacctgaaagacccgggtgcactg
gatgcgctgcagaaggtcctggataagatggtgtcgaccggcggcaccaactacgaagac
gtgttcaaggctgcatccaacttcttcaaaagtggccaggcgactggcaacaaggatgca
atcaacaccacttacttcatcaccgatggtcagccgacgtactaccagcgctatgagcag
accaatccgagcttgtacggcaacgtcaagctggacgatgttgtcaacatgagtaactac
accctgggtaccgccacgcggatcactatcgattcggagcactaccttgacatcaatacg
gtagggacggtgaccctcgggacctacaactggtggggttgggggcagtccaacctgggt
accattcatgcccaaggggatggcacctatgagttgtcgtccgttggcggcaacggtaca
gcctcatcctcaaacatcaacgatccaacgctcatcagcaactcgcagaacgcgttcgca
ctgctcaagggcctgtccacaggtggcgtagaagccatcggcctcaacagcgggatcagc
ctgaatcagttggcaccgtacgacagcgacaacaagccacaaagcaacatcgatccgaag
gacctggccaacgccatcctcggtcacagcgaggccaccctgccgggtgccgaccgtgtc
gatggaggtgacggcaacgatatcctgttcggcgacctggtgagcttcccgggcattacc
ggcgagggctataacgccatccagacctacgtggcagggaaaaacggcgtggcggttgct
gctgtcaccggccaggatgtgcacaagtacatcaccgagcattacaccgagttcaacacc
tcgggtgccaaagacggtaatgacaccctgctgggtggctcgggtgatgacatcctgttc
ggccagggcggcaacgactacctggacggtggcaagggcaacgacatcctgttgggcggc
acgggtaacgacacgctgatcggcggccagggtaatgacatcctgatcggcggcaccggt
gccgataccttcgtctggagatccggtgacgtcggcaacgacgtgatcaaggacttcaag
gcctcggaaggcgaccgtatcgacctgcgtgacctgctcaagggcgaaaccgacagcacc
atcgacaacttcctgaagttgaccacggtggataacgtgaccacgctgcagatcagttcc
gaaggcaagctcaacgctgacggcggcctggccaatgcggatgtgacgatcaagctggaa
ggcaacaactggtctggccaatcgatcaactcgttgatcactggtgctgacccgaccatc
aaggtcgatcactcctaa
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integrated database retrieval system
