Pseudomonas shahriarae: HU773_002100
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Entry
HU773_002100 CDS
T07642
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pshh
Pseudomonas shahriarae
Pathway
pshh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pshh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HU773_002100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pshh03019
]
HU773_002100
03400 DNA repair and recombination proteins [BR:
pshh03400
]
HU773_002100
Enzymes [BR:
pshh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HU773_002100
Messenger RNA biogenesis [BR:
pshh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HU773_002100
DNA repair and recombination proteins [BR:
pshh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HU773_002100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
ResIII
RecQ_Zn_bind
SNF2-rel_dom
S-methyl_trans
Motif
Other DBs
NCBI-ProteinID:
QXH89692
LinkDB
All DBs
Position
465121..467058
Genome browser
AA seq
645 aa
AA seq
DB search
MHDTLQQVFGYPQFRPGQEAAVSAVLAGRSAAAIFPTGSGKSLCYQLSAVLLPHLTLVVS
PLLALMQDQLDFLQRHGISAGSIDSTQSREQANDVMARARSGELKILMISVERLKNERFR
NFLHSVSISLLVVDEAHCISEWGHNFRPDYLKLPDYQHQFNIPQALLLTATATPKVIADM
QAKFAIAPADVITTGFYRSNLNLWVEPVSGADKRRRLAEWMGERANQPSIVYVTLQKTAE
QIAEHLNRHGIQAEAYHAGLPHDKREGIQRRFMGGQSNCIVATIAFGMGIDKSDIRNVVH
FDLPKSIENYSQEIGRAGRDGQPSECLVLANRDSINVLENFVYGDTPEQEGIRLVLEELL
AAGDDGQWEFLLRSLAELSNIRELPLKTLLVQLELKGVIAPRYAFYAEYRFKYLVEPEVL
LARFSGERQQFVAAIIQACKRARSWATVDFDALYQQHQAERGRVVKALDYFQEQGLIELE
SKQMTEVYSLLDTGFDPQALSAELYTGFKQHEATEVARIHGMLALFASERCLGFRLAEYF
GDAAAPRQCGHCSVCSGQVAHLPAPPGLALLVDKNFQGLCGDFIHRHHQHTGSLPGAERL
TRFLCGISVPLFTKLKARGIPGFAVLEEYPYAEVRDWAEAHLNDL
NT seq
1938 nt
NT seq
+upstream
nt +downstream
nt
atgcacgacaccctccagcaggtctttggttatccacagtttcgcccaggccaggaggcg
gctgtcagcgccgtgctggccggccgctcggcggcggcgatctttcccaccggctccggc
aaatccctctgttatcagctctcagccgtgttgctgccgcacctgacactggtagtgtcg
ccgttgttggcgttgatgcaggaccaactggactttttgcagcgccatggcatttcggcc
ggcagcattgattcgacacaaagccgtgagcaggccaatgacgtaatggcccgcgctcgc
tccggcgaattgaagatcctgatgatttccgtagagcgtctgaagaacgagcgctttcgc
aactttttgcacagcgtttcgatttcgctactggtggtggacgaggcgcactgtatttcc
gagtggggccacaacttccgcccggactacctgaaactccccgactaccaacaccagttc
aacattccccaggcgctgctgttgacggccaccgccacgcccaaggtcattgcggacatg
caggccaagttcgccatcgcccccgccgacgtgatcaccacggggttctaccggtccaac
ctcaacctgtgggtggagccggtcagcggcgccgacaagcgccggcgcctggcggagtgg
atgggcgagcgggccaaccagccgagcatcgtctatgtcaccttgcagaagactgccgag
cagatcgccgagcacctgaatcgccatggcatccaggccgaggcttatcacgcaggttta
ccccatgataagcgcgaaggcatccagcgccggttcatgggcggccagtccaattgcatc
gtcgctaccattgccttcggcatgggcatcgacaagagcgacatccgcaatgtggtgcat
ttcgatctgcccaaatccatcgagaactacagccaggaaatcgggcgtgccggtcgcgat
ggccagccttccgagtgcctggtgctggccaaccgcgacagcatcaatgtgttggagaac
tttgtctacggcgatacgccggagcaggaaggcatccgcctggtgctggaggaactgctg
gcggccggtgatgacgggcaatgggagtttctgctgcgctcgttagcggaactgagcaat
atccgcgagctaccgctcaagactttgctggtgcagttggagctcaagggggtgattgca
ccgcgctatgcgttttatgccgagtatcgcttcaagtacctggtagaaccggaggtattg
ctggcgcgtttttccggtgagcgacagcagtttgtcgccgcgattatccaagcgtgcaaa
cgggccaggagctgggccaccgtggactttgatgcgctttatcaacagcaccaggccgaa
cgcggccgggtggtcaaggcgctggattatttccaggagcagggcctgatcgagctggag
agcaagcagatgaccgaggtctatagcctgctcgataccgggtttgatccccaggccttg
agcgccgagttatacacaggcttcaagcagcacgaagccacggaagtggcgcggatccat
gggatgttggcgttgttcgccagtgagcgttgcctgggctttcggttggccgagtatttt
ggcgacgcagccgccccccgccagtgtgggcattgctcggtttgttcgggacaggtcgcc
catctgccggcaccaccgggcctggcactgcttgtggataaaaacttccaggggctgtgc
ggggattttatccacaggcatcatcaacacactggcagcttgccaggggccgagcgcttg
acgcggtttttatgcgggatcagcgtgccactgtttaccaagctcaaggcccgggggatt
ccagggtttgcggtgctggaagagtatccgtatgccgaggtgcgggattgggccgaggcc
catctgaacgacctgtaa
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