Pseudomonas shahriarae: HU773_003355
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Entry
HU773_003355 CDS
T07642
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pshh
Pseudomonas shahriarae
Pathway
pshh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pshh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HU773_003355 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pshh03019
]
HU773_003355 (rnr)
03016 Transfer RNA biogenesis [BR:
pshh03016
]
HU773_003355 (rnr)
Enzymes [BR:
pshh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
HU773_003355 (rnr)
Messenger RNA biogenesis [BR:
pshh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HU773_003355 (rnr)
Transfer RNA biogenesis [BR:
pshh03016
]
Prokaryotic type
tRNA degradation factors
HU773_003355 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
OB_Dis3
SRP-alpha_N
Motif
Other DBs
NCBI-ProteinID:
QXH89929
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All DBs
Position
762225..764858
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AA seq
877 aa
AA seq
DB search
MADWQSLDPEAAREAEKYENPIPSRELILAHLADRGSPASREQLVEEFGLTTEDQLEALR
RRLRAMERDAQLIYTRRGTYAPVDKLDLILGRIAGHRDGFGFLIPDDGSDDLFMSPAQMR
LVFDGDRALARVSGLDRRGRREGVIVEVVSRAHESIVGRYFEEGGIGFVIPDNPKVQQEV
LVTPGRNGAAKVGQFVEVKITHWPTPRFQPQGDIVEVVGNYMAPGMEIDVALRTYDIPHV
WPEAVLKEAAKLKPEVEEKDKEKRIDLRHLPFVTIDGEDARDFDDAVYCEAKPGKLRLFS
GGWKLFVAIADVSSYVKIGSALDNEAQVRGNSVYFPERVIPMLPEQLSNGLCSLNPKVDR
LAMVCEMTISKTGEMTDYQFYEAVIHSQARLTYNKVSTILETPKTSEAKALRSQYSDVVP
HLKQLYSLYKVLLGARHVRGAIDFETQETRIIFGSERKIAEITPTTRNDAHKLIEECMLA
ANVATAEFLKKHEIPALYRVHDGPPPERLEKLRAFLGELGLSLHKGKDGPSPKDYQALLA
SIKDRPDFHLIQTVMLRSLSQAVYSADNQGHFGLNYEAYTHFTSPIRRYPDLLTHRAIRS
VIHSKQNTPHVKRAGAMTIPKARIYPYDEAALEQLGEQCSMSERRADEATRDVVNWLKCE
FMKDRVGESFPGVITAVTGFGLFVELTDIYVEGLVHVTALPGDYYHFDPVHHRLAGERTG
RSFRLGDTVEVRVMRVDLDERKIDFEMAEKTLEAPIGRKKRGAETTAPAKKGAPAKAAAA
AEPAPAKPARRSSAKEKVSDAYRPSDAAAKNAELRKSRELKQQLLNEAKSGGKAASGGKS
QAADKPSSKPSKHRKGPPKAGSAPAKSGGSRKPKAKS
NT seq
2634 nt
NT seq
+upstream
nt +downstream
nt
atggccgattggcagtccctcgatcccgaggccgctcgtgaagcggaaaaatatgaaaac
cctattcctagccgcgaactgatcctggcgcatctcgccgatcggggttcgcctgctagc
cgcgagcagctggttgaagaattcggtctgaccaccgaagaccaactcgaagcactgcgc
cgccgcctgcgcgccatggagcgcgatgcacagttgatctacacccgtcgcggcacttac
gcgccggtggacaagctcgacctgatccttggccgcattgccggtcaccgtgatggcttc
ggcttcctgatccctgatgacggcagtgacgacctgttcatgagcccggcgcaaatgcgc
ctggtgttcgatggcgaccgcgccctggcgcgcgtgtccggcctggaccgtcgcggtcga
cgcgaaggcgtgatcgtcgaagtggtgtcccgtgcccacgaatccatcgtcggtcgctac
ttcgaggaaggcggcatcggcttcgtgattccggacaacccgaaggtccagcaggaagtg
ctggtgaccccgggccgcaatggcgccgccaaggtcggtcagttcgtcgaggtgaaaatc
acccactggccaaccccgcgcttccagccacagggcgatatcgtcgaagtggtcggcaac
tacatggcgccgggcatggaaatcgatgttgcgctgcgcacctacgatattcctcacgtc
tggcctgaggctgtgctcaaagaagccgccaagctcaagccggaagtcgaagaaaaagac
aaagagaaacgcatagatctgcgtcatctgccgttcgtcaccattgacggcgaagatgcc
cgcgacttcgacgatgcggtctactgcgaagccaagcccggcaagctgcgcctgttctcc
ggcggctggaagttgttcgtcgcgattgccgacgtatccagctacgtgaagatcggttcg
gccctggataacgaagcccaggtgcgcggcaactccgtgtacttccctgagcgcgtgatc
ccgatgctgcctgagcagctgtccaacggcctgtgctccctgaacccgaaagtcgaccgt
ttggccatggtgtgcgagatgaccatctcgaaaaccggcgaaatgaccgactaccagttc
tacgaagcggtgatccactcccaggcccgcctgacctacaacaaggtcagcaccatcctg
gaaacgccgaaaaccagcgaagccaaggctttgcgcagccagtactctgacgtagttcca
cacctcaagcagctctactcgctgtacaaggtgttgctgggcgcacgtcatgtccgtggc
gcgatagattttgaaacccaggaaacccggatcatcttcggttccgagcgcaaaatcgcg
gaaatcacgccgaccacccgcaatgacgcgcacaagctgatcgaggaatgcatgctggcg
gccaacgtggccaccgccgaattcctgaagaagcacgagattcctgcgctgtaccgggtg
cacgatggtccgccaccggagcgcctggaaaaactgcgcgccttcctgggcgagcttggc
ctgtccctgcacaaaggcaaggatggcccgtcgccgaaggattaccaggctctgttggcc
agcatcaaggaccgtccggacttccacctgatccagaccgtgatgctgcgctccctcagc
caggcggtgtacagcgccgacaaccagggccacttcggcctgaattacgaggcgtatacc
cacttcacctcgccgatccgccgttacccggacttgctcacgcaccgcgccatccgcagc
gtgatccattccaagcagaacaccccgcacgtcaagcgcgccggtgccatgactattccg
aaggcacggatctatccgtacgacgaagcggccctggaacagttgggcgagcagtgctcc
atgagcgagcgccgtgccgacgaagccacccgtgacgtagtgaactggctcaagtgcgag
ttcatgaaggatcgcgtaggtgagtcgttcccaggcgtgatcaccgccgtgaccggtttt
ggtctgttcgtcgagctgaccgacatctacgtcgaaggcctggtgcacgtcaccgccttg
ccgggtgactactatcacttcgatcctgtgcatcaccgcctggcgggcgagcgcaccggt
cgcagcttccgtttgggcgataccgtagaagtacgggtcatgcgcgtcgatctcgacgaa
cgcaagatcgacttcgagatggctgaaaaaaccctcgaagcgccgattggccgaaaaaag
cggggtgccgaaaccacagcgccggcgaaaaaaggcgctcctgcgaaagctgcagcggct
gccgagcctgcgccggccaagcctgcgcgccgctcctcggccaaggaaaaggtcagcgac
gcgtaccgccccagtgatgcggcggcgaaaaacgccgagttgcgcaagagtcgcgagttg
aagcagcagttgctcaacgaagccaaaagcggtggtaaagcggcgtctgggggaaagtcc
caggccgccgacaagccgtcgagcaaaccgagtaaacaccgtaaaggcccgccaaaagcg
ggttcggcccctgccaagagcggcgggtcgcgcaaacctaaggccaagtcatga
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