Pseudomonas shahriarae: HU773_004135
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Entry
HU773_004135 CDS
T07642
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
pshh
Pseudomonas shahriarae
Pathway
pshh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pshh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
HU773_004135 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pshh03400
]
HU773_004135 (recB)
Enzymes [BR:
pshh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
HU773_004135 (recB)
DNA repair and recombination proteins [BR:
pshh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
HU773_004135 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
Viral_helicase1
AAA_11
AAA_30
AAA_25
AAA_12
Motif
Other DBs
NCBI-ProteinID:
QXH90076
LinkDB
All DBs
Position
943326..947003
Genome browser
AA seq
1225 aa
AA seq
DB search
MSTKPLALAFPLRGSQLIEASAGTGKTFTISALYLRLVLGHGGDEAGFGRELLPPQILVV
TFTDAATKELRERIRTRLAQAARFFRDEIEQPDALIAELRDQYSAEQWQGCANRLDIAAQ
WMDEAAVSTIHSWCQRMLREHAFDSGSLFTQTLETDHSDLLGEVLRDYWRLFCYPMHGDA
LNWVRSNWGGPAALMPRVRALFGSERPGDEPREPAELIEACLHERREALVALKAPWQQWA
AELREICLQAVAAKAVDGRKMQARYFEPWFEKISAWAADETLEQLDIGTGFTRLTPEGMA
EAWKGDAPHHPGLDAMAGLKASLDALPTPDAAVLQHAAAWVGKRFEEEKRRRAEMGFDDM
LIRLDAALQTEGGERLASVIREQFPVALIDEFQDTDPVQYRIFESIYRIEDNSPRSGLFL
IGDPKQAIYAFRGADIYTYLRARQATAGRLHTLGTNFRSSHAMVEAVNHVFERAESGRGA
FLFRTPDGDNPVPFQPVSSQGRKEQLQVDGHTLPALNIWHLPTDQPISNVRYRQQLAGAC
ASQIVALLNGGQQGTAGFIKGADFTPVQPSNIAILVRDGKEAQAVRGELAARGVRSVYLS
DKDSVFASQEAHDLLAWLKACAEPDVERPLRAALACVTLNLSLPELEQLNQDELVWEQRV
MQFRDYRVIWRTQGVLPMLRRLLHDFKLPQTLIARSDGERVLTNLLHLCELLQQAAAELD
GEQALIRHLAEHLALSGQAGEEQILRLESDEQLVKVVTIHKSKGLEYDLVFLPFICSAKP
VDGSRLPLHYHDANGKSQVSLKPTVELIAQADDERLAEDLRLFYVALTRAKHACWLGVAD
LKRGNNNSSVLHLSALGYLLGGGAALGESAALARWLMDLQDGCAAIAYGQMPEADTSTYQ
PPRNDATLLAPLLPKRKAAENWWIASYSALRIGESMSAASLEAPESPQAQKLFDDERLDP
DAPREVAASGGDIHRFPRGPNPGTFLHGLLEWAGNEGFNVTAEAIEDAVARRCNRRGWEG
WIGTLSGWLGHLLQVPLGLGHGQASVTLSDLQQYQIEMEFWFASHKVDVLALDQLVCQYT
HDGVSRVAAEPVLLNGMFKGFIDLTFEHDGRYYVADYKSNWLGADDAAYTREAMEQSILD
HRYDLQYVLYLLALHRQLKARLPDYDYDQHVGGALYLFLRGSQAVSQGAYFTRPPRELIE
RLDLLFQGKPQPPKVEPAWEQGVLL
NT seq
3678 nt
NT seq
+upstream
nt +downstream
nt
atgagcaccaaacccctggccctggccttccccctgcgtggcagccaactgatcgaagcc
agcgccggtaccggcaagaccttcaccatctccgcgttatacctgcgcctggttctgggc
cacggtggcgatgaggcgggttttggccgcgaattgctgccgccgcaaatcctcgtggtg
accttcaccgatgccgccaccaaagagctgcgtgaacgcatccgcacccgcctggcacaa
gcggcgcgtttctttcgtgacgaaatcgaacagcccgatgccctgatcgccgagctgcgt
gatcagtacagcgccgagcagtggcagggttgcgccaaccgcctcgacatcgccgcgcaa
tggatggacgaggccgccgtctcgaccatccacagttggtgccagcgcatgctgcgcgag
cacgctttcgacagtggcagcctgtttacccagaccctggaaaccgaccacagcgacttg
cttggcgaagtgttgcgcgactactggcggctgttctgctacccgatgcacggcgatgcc
ctgaactgggtccgcagcaactggggtggccctgcggcgctgatgccccgagtgcgcgcg
ttgttcggtagcgagcgccccggtgatgaaccccgtgagcccgccgagttgatcgaggcc
tgcttgcacgagcgccgcgaggccctggtggcgctcaaggccccctggcagcaatgggcc
gccgagttgcgcgagatctgcctgcaagctgtcgccgccaaggctgtggatggtcgcaag
atgcaggcccgttatttcgagccctggttcgagaaaatcagcgcctgggccgctgacgaa
accctggaacaactggacatcggcaccggcttcacccgcctgacccccgagggtatggcc
gaagcctggaagggcgacgccccccatcaccccggcctggatgccatggcgggcctcaaa
gccagcctcgacgccttgcccacgcccgatgctgcagtgttgcaacacgcggcggcctgg
gtcggcaaacgctttgaagaagagaaacgccggcgtgccgagatgggttttgacgacatg
ctcatccgcctcgacgccgccctgcaaaccgagggtggcgaacgtctggcaagcgtaatc
cgcgagcagttcccggtggccctgatcgacgaattccaggacaccgacccggtgcagtac
cggatcttcgaaagcatctaccgcatcgaagacaacagcccgcgcagcggcctgttcctg
atcggcgaccccaagcaggcgatttatgcgtttcgcggcgccgatatctacacctacctg
cgcgcccgccaggccaccgccgggcgcttgcataccctgggcaccaactttcgctccagt
catgcgatggtcgaggcggtcaaccacgtgttcgagcgtgcggagtccgggcgtggggcg
tttctgtttcgtacgcccgacggcgacaacccggtgcctttccagccagtgtcgtcccag
ggtcgcaaggagcagttgcaggtcgatggccacacactgccagccctgaatatctggcac
ctgcccaccgaccagccgatctccaatgtgcggtatcgccagcaattggcaggcgcgtgc
gccagccagattgtcgcgttgctcaatggcggtcagcagggcacggcagggtttatcaag
ggggcagacttcactcccgtgcaaccgtcgaacatcgccatccttgtgcgtgacggcaag
gaagcccaggccgtacgcggtgagctggccgcgcggggtgtgcgcagcgtgtacctgtcc
gataaggactcggtattcgcctcccaggaagcccatgacctgctcgcctggctcaaagcc
tgtgccgaaccggatgtcgagcgcccgctgcgcgcggccctggcctgcgtcaccctcaac
ctgtcgctgcccgagctggaacaactgaaccaggacgaactggtctgggagcagcgagtc
atgcagttccgcgattaccgcgtgatctggcgcacccagggcgtgctgccgatgctgcgg
cgtctgctgcatgacttcaagttgccgcaaaccctgattgcccgcagcgatggcgaacgg
gtgctgacgaacctgctgcacctgtgcgagttgctgcaacaggccgccgcagagctggac
ggcgaacaagcgctgatccgccatcttgcggagcacctagcgctctcgggccaggccggc
gaagagcagatcctgcgcctggaaagcgatgagcaactggtcaaagtggtgactatccac
aagtccaagggcctggaatacgacctggtcttcctgccgtttatctgctcggccaagccg
gtcgacggcagccgcctgccgctgcattaccacgatgccaacggcaagtcccaggtcagc
ctgaaacccaccgtcgaactgatcgcccaggctgatgacgagcgcctggccgaagacctg
cgtctgttctatgtggcgctgactcgggccaagcatgcctgttggctgggcgtggccgac
ctcaaacgcggcaataacaacagttcggtgttgcacctgtcagccctgggctatctgctg
ggcggcggcgcggccctgggtgagtccgcagccctggcccgctggctgatggatttgcag
gacggctgcgcggcgattgcctacgggcaaatgccggaagctgacaccagtacctaccaa
ccaccgcgcaatgacgcgaccttgcttgcgccgctgctgcccaagcgcaaggccgcggaa
aactggtggatcgcgtcctacagcgccctgcgcatcggcgaaagcatgagcgccgccagc
ctggaagccccggaaagcccccaggcacagaagctgttcgacgacgaacgcctggacccg
gatgcaccgcgcgaagtcgccgcgtctggcggggatattcaccgtttcccacggggcccc
aaccccgggacctttctccacggcctgctggagtgggccggtaacgaaggcttcaacgta
acggccgaagccatcgaagatgccgtcgcccggcgctgcaaccgacgtggttgggaaggc
tggattggcaccctcagcggctggctcgggcacctgttgcaagtgccgttgggcctgggc
catgggcaggcctccgtgaccctgagcgacctgcagcagtatcagattgaaatggagttc
tggttcgcgagccacaaagtcgatgtgctcgccctcgaccaactggtctgccaatacacc
catgacggcgtgtcgcgggtcgccgccgagccggtgttgctcaatggcatgttcaagggc
tttatcgacctgaccttcgaacatgacggccgctactacgtggctgactacaaatccaac
tggctcggcgccgacgacgcggcctacacccgtgaggccatggaacagtcgattctcgac
catcgctacgacctgcaatatgtcctctacctgctggccctgcatcgccaactcaaggcg
cgcctgccggattacgattacgaccagcatgtgggcggcgcgctctatctgttcctgcgc
ggtagccaagccgtgagccagggcgcgtatttcacccggccgccacgggagctgatcgaa
cgcctggacctgctgttccagggcaagccgcaaccgcccaaggtcgaaccggcctgggaa
caaggagtcctgctatga
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