Pseudomonas shahriarae: HU773_006770
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Entry
HU773_006770 CDS
T07642
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pshh
Pseudomonas shahriarae
Pathway
pshh03030
DNA replication
pshh03430
Mismatch repair
pshh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pshh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HU773_006770 (dnaE)
03430 Mismatch repair
HU773_006770 (dnaE)
03440 Homologous recombination
HU773_006770 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pshh03032
]
HU773_006770 (dnaE)
03400 DNA repair and recombination proteins [BR:
pshh03400
]
HU773_006770 (dnaE)
Enzymes [BR:
pshh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HU773_006770 (dnaE)
DNA replication proteins [BR:
pshh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HU773_006770 (dnaE)
DNA repair and recombination proteins [BR:
pshh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HU773_006770 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
tRNA_anti_2
HROB
Motif
Other DBs
NCBI-ProteinID:
QXH90572
LinkDB
All DBs
Position
1524579..1528100
Genome browser
AA seq
1173 aa
AA seq
DB search
MPASFVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKSAMGAG
IKPICGADLWLSNKDPDNALSRISLLAMNGVGYRNLTELISRGFIDGQRNGSIIIEREWV
AEASEGLIMLSAAKEGEVGLALLGGNPQEAEVLAREWMAVFPDRFYLEVQRTNRPNDEEH
LHAAVALAEKLGAPLVATNDVRFIKKEDFEAHETRVCIGEGRALDDPRRSKNYSEEQYLK
SAEEMAELFSDLPEALENSVEIAKRCNIEVKLGKHFLPNFPIPDGMTIDEYFRKVSFDGL
EERLSVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKSNGVPV
GPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEYV
AEKYGRNAVSQIITFGSMAAKAVIRDVARVQGKSYGLADRLSKMIPFEVGMTLEKAYEQE
EILRDFIKVDEEAAEIWDMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDEEGDGLV
TQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRERAKVDEAPLDIAFIPLDDKPTYA
LLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGR
AELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKKPE
EMAKQRGGFIEGCATNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKAHY
PAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNASEFKFTVNDEGRIIYGLGAI
KGVGEGPVEAITEARQDGPFKDLFDFCARVDLKRINKRTLDGLIRSGALDRLGPYFHDES
KAYQANIDRNRAVLLTAMEEAIKAAEQTARTHDSGHADLFGGLFVEEDADVYANHRKAKE
LTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDTQTVAGMIIALRVM
KNKKGDKMGFITLDDRSGRIEASLFADAFHSAQSLLQTDAMVVVEGEVSNDDFSGGLRLR
IKRVMSMEDARTNLAESLRLKVKTEALKGDQLRWLGDLLKRHRGACPVTMEYTGSDAKAM
LQFGETWRIDPADGLIQALRDQFGRDNVFLQYR
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atgccggcttcattcgttcacctgcgcctgcacactgaatactccctggtcgacggcctg
gtacggatcaaaccgctggtcaaaaccctggtgggcatgaatatgccggccgtggcggtg
accgaccagaacaacatgtgctccctggtcaagttctacaagagcgccatgggcgccggc
atcaagccgatctgcggcgccgacttgtggctgtccaacaaagaccccgataacgccttg
agtcgcatcagcctgttggcgatgaacggcgtgggttatcgcaacctgactgaactgatt
tcccgcggttttatcgacggccagcgcaacggctcgatcatcatcgagcgcgaatgggta
gccgaggccagcgaagggctgattatgctgtcggctgccaaggaaggggaggtcggcctc
gccttgctgggcggcaatccccaggaggcagaagtgctcgcccgggagtggatggcggtg
ttccctgaccgcttctacctggaagttcagcgcaccaatcgccccaacgacgaagagcac
ctgcacgctgccgtggccctggccgaaaagctgggtgcgccgctggtcgccaccaacgat
gtgcgttttatcaagaaggaagacttcgaggcccacgaaacccgcgtgtgtatcggcgaa
ggccgggcgctggacgatccgcgtcgctcgaagaactacagcgaagagcagtacctcaaa
agcgccgaggaaatggctgagctgttcagcgacttgcccgaggccctggaaaactccgtc
gaaattgccaagcgctgcaatatcgaagtgaagctgggcaaacactttttgcccaacttc
ccgattcccgatggcatgaccatcgacgagtatttccgcaaggtgtcgttcgatggcctg
gaagagcgtctttccgtcctgctgcccaaggacaccaccgaagactacgaggccaagcgc
caggtgtatgtcgaccggctgaacttcgagctggatatcattatccagatggggttcccc
ggttacttcctgatcgtaatggactttatccagtgggccaaaagcaacggcgtgccggtg
ggccctggccgggggtcgggtgccggctcgctggtggcttatgtgcagaagatcaccgac
ctcgacccgctggaatatgacctgctgttcgaacggttcctgaacccggaacgggtatcg
atgcccgacttcgacgtcgacttctgcatggatggtcgcgaccgtgtcatcgaatatgtg
gccgagaaatatggccgtaacgctgtaagccagatcatcacctttggttccatggcggcc
aaggcggtaattcgtgacgtggcgcgggtgcagggcaagtcctacggcctggcggatcgt
ctgtcgaagatgatcccctttgaagtcggcatgaccctggaaaaggcctacgagcaggaa
gaaatcctgcgcgacttcatcaaggtcgatgaagaagccgccgaaatctgggacatggcg
cgcaagctcgaaggcgtggtgcgtaacgttggtaagcacgccggtggcgtggtaatcgcg
ccgaccaagctgacagacttttcgccgatctattgcgacgaagaaggcgatggcctggta
acccagttcgacaaggatgacgtggaggcggccggcctggtgaagttcgacttcctcggc
ctgcgtaccctgacgatcatcgactgggcgctcaagaccatcaaccgtgaacgcgccaag
gtggatgaagcgccgctggatatcgcttttatcccactggacgacaaacctacctacgcg
ctgctgcaaaaagccgaaaccactgcggtgttccagcttgaatcccgcggcatgaaggag
ctgatcaaaaagctcaagcccgactgcctggaagacttgatcgcactggtggccctgttc
cgtccgggcccgctgcaatcgggcatggtggacgactttatcaaccggaagcacgggcgc
gccgaactggcttacccgcactccgactaccagtacgaaggcctcaagccggtactggca
ccgacctacggcatcatcctgtatcaggaacaggtgatgcagatcgcccaggtcatggcc
ggctacacccttggtggtgcggacatgctgcgccgggccatgggtaagaaaaaacccgag
gaaatggccaagcagcgcggcggcttcattgagggttgcgccaccaacaatatcgacgcc
gacctggccggtaacatctttgacctggtggaaaagttcgccggttatggtttcaacaaa
tcccactccgccgcctacggcctggtgtcataccagactgcctggcttaaggcccactac
ccggcgccgttcatggcggcggtgctgtcggcggatatgcacaacaccgacaaggtcgtg
accttgatcgaagaagtgcggaccatgaagctgcgcctcgacgcgccggacgtgaacgcc
tcggagttcaagttcacggtgaacgacgaaggtcgcatcatctatggcctgggcgcgatc
aagggcgtgggcgaaggcccggttgaggcgattaccgaggcgcgccaggacggtccgttc
aaggacctgttcgacttctgcgcccgggtcgacctcaagcgcatcaacaaacgtaccctc
gatggcctgatccgcagcggcgcacttgaccgtcttggtccgtacttccatgacgagtcg
aaggcctaccaggccaatatcgaccgtaaccgcgcggtactgctgaccgccatggaagaa
gcgatcaaggccgctgaacaaaccgcccgcacccatgacagtgggcatgccgacctgttt
ggcgggttgttcgtcgaagaagatgccgatgtgtacgctaaccaccgtaaggccaaggag
ctgaccctcaaggaacgcctcaagggtgaaaaagacaccctgggcctgtacctcaccggc
cacccgattgacgaatatgagggcgaaatccggcgttttgcccgccagcgcatcatcgac
ctgaaaccggcgcgcgatacccagaccgtggccgggatgatcattgccctgcgggtaatg
aagaacaaaaagggcgacaagatgggtttcatcaccctcgacgaccgctccgggcgtatc
gaagcgtcgctgtttgccgatgcgttccattccgcgcagtcgctgttgcagaccgacgcg
atggtggtggtggagggcgaggtcagcaacgatgacttctccggcggcctgcgcctgcgg
atcaaacgcgtaatgagcatggaagatgcccgcaccaacctggccgaaagcctgcgcctg
aaggtgaaaaccgaagcgctcaagggcgatcagctacgctggctgggggatctgctcaaa
cgtcaccgtggtgcgtgcccggtgaccatggagtacaccggcagcgatgccaaggcgatg
ttgcagtttggcgagacgtggcgaattgacccggctgatggcttgattcaagcattgcgt
gaccagttcgggcgtgacaacgtcttcctccaataccgttga
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integrated database retrieval system
