Pseudomonas shahriarae: HU773_007930
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Entry
HU773_007930 CDS
T07642
Name
(GenBank) DEAD/DEAH box helicase
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
pshh
Pseudomonas shahriarae
Brite
KEGG Orthology (KO) [BR:
pshh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pshh03009
]
HU773_007930
Enzymes [BR:
pshh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HU773_007930
Ribosome biogenesis [BR:
pshh03009
]
Prokaryotic type
rRNA helicases
HU773_007930
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Abhydrolase_1
Motif
Other DBs
NCBI-ProteinID:
QXH90790
LinkDB
All DBs
Position
1763713..1765059
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AA seq
448 aa
AA seq
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MFSQFALHERLLKAVAELKFVEPTPVQAAAIPLALEGRDLRVTAQTGSGKTAAFVLPILN
RLIGPAKIRVSIKTLILLPTRELAQQTLKEVERFSQFTFIKSGLITGGEDFKVQAAMLRK
VPDILIGTPGRMIEQLNAGNLDLKEVEVLVLDEADRMLDMGFADDVQRLVEECVNRQQTM
LFSATTGGSTLREMVAKVLNNPEHLQVNNVSDLNSTTRQQIVTADHNVHKEQILNWLLAN
ETYQKAIVFTNTRAMADRIYGRLVAQEYKAFVLHGEKDQKDRKLAIDRLKQGGVKILVAT
DVAARGLDVEGLDMVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSIER
YLKQSFERRTIKEVKGTYTGPKKVKASGKAVGVKKKKVDAKGDKKKTGAKSPTKRKIANR
PKTDNLSLVSKDGMAPLKRRKPEAPAAE
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
gtgttttcccaattcgccctgcacgaacgcctgctcaaagccgtggccgagcttaaattt
gtcgagcctacgcctgtgcaagcagcggccatcccgctcgcgctcgaagggcgtgacctg
cgggtgacggctcaaaccgggagtggcaagaccgccgctttcgtcctgccgatcctcaac
cgtctgatcggcccggccaagatccgcgtcagcatcaagaccctgatcctgctgcctacc
cgtgagctggcccagcagaccttgaaggaagtggaacgcttctcgcagttcaccttcatc
aagtccggcctgatcaccgggggcgaagacttcaaggtccaggccgccatgctgcgcaag
gtcccggatatcctgatcggtacccctgggcggatgatcgagcaactgaacgccggcaac
ctggacctcaaggaagtcgaagtgctggtgctggacgaagccgaccgcatgctcgacatg
ggctttgccgacgacgtgcagcgcctcgtcgaagagtgcgtcaaccgccagcagaccatg
ctgttctccgccaccaccggcggctcgaccctgcgcgagatggtcgccaaggtcctgaac
aaccctgagcacctgcaggtcaataacgtcagcgacctgaactccaccacccgccagcag
atcgtcaccgctgaccacaatgtgcataaagagcagattctcaactggctgctggccaac
gagacttatcagaaagccatcgtgttcaccaacacccgtgccatggccgaccggatctac
gggcgcctggtggcgcaggagtacaaggcgtttgtattgcacggtgagaaggaccagaag
gaccgcaagctggcgatcgaccgactcaagcagggcggcgtgaagattctggtagccacc
gacgtcgccgcccgcggcctggacgtggaaggcctggacatggtgatcaacttcgatatg
ccgcgcagcggcgacgaatatgtgcaccgtatcggccgtaccgggcgtgccggcaacgat
ggcctggccatctcgctgatctgccatggcgactggaacctgatgtcgagcatcgagcgc
tacctcaagcagtcgttcgagcgccgcaccatcaaggaagtcaaaggcacctacaccggg
ccgaagaaggtcaaggcttcgggcaaggccgtgggcgtgaagaagaaaaaggtcgacgcc
aagggcgacaagaagaaaaccggcgccaagtcgccgaccaagcgcaagatcgccaaccgg
ccgaagaccgacaacctgtcgttggtcagcaaggacggcatggcgccgctcaagcgccgc
aagccagaagcaccggctgccgagtaa
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