Pseudomonas shahriarae: HU773_019610
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Entry
HU773_019610 CDS
T07642
Symbol
fadB
Name
(GenBank) fatty acid oxidation complex subunit alpha FadB
KO
K01825
3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:
1.1.1.35
4.2.1.17
5.1.2.3
5.3.3.8
]
Organism
pshh
Pseudomonas shahriarae
Pathway
pshh00071
Fatty acid degradation
pshh00280
Valine, leucine and isoleucine degradation
pshh00310
Lysine degradation
pshh00362
Benzoate degradation
pshh00380
Tryptophan metabolism
pshh00410
beta-Alanine metabolism
pshh00640
Propanoate metabolism
pshh00650
Butanoate metabolism
pshh00907
Pinene, camphor and geraniol degradation
pshh00930
Caprolactam degradation
pshh01100
Metabolic pathways
pshh01110
Biosynthesis of secondary metabolites
pshh01120
Microbial metabolism in diverse environments
pshh01200
Carbon metabolism
pshh01212
Fatty acid metabolism
Module
pshh_M00087
beta-Oxidation
pshh_M00957
Lysine degradation, bacteria, L-lysine => glutarate => succinate/acetyl-CoA
Brite
KEGG Orthology (KO) [BR:
pshh00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00640 Propanoate metabolism
HU773_019610 (fadB)
00650 Butanoate metabolism
HU773_019610 (fadB)
09103 Lipid metabolism
00071 Fatty acid degradation
HU773_019610 (fadB)
09105 Amino acid metabolism
00280 Valine, leucine and isoleucine degradation
HU773_019610 (fadB)
00310 Lysine degradation
HU773_019610 (fadB)
00380 Tryptophan metabolism
HU773_019610 (fadB)
09106 Metabolism of other amino acids
00410 beta-Alanine metabolism
HU773_019610 (fadB)
09109 Metabolism of terpenoids and polyketides
00907 Pinene, camphor and geraniol degradation
HU773_019610 (fadB)
09111 Xenobiotics biodegradation and metabolism
00362 Benzoate degradation
HU773_019610 (fadB)
00930 Caprolactam degradation
HU773_019610 (fadB)
Enzymes [BR:
pshh01000
]
1. Oxidoreductases
1.1 Acting on the CH-OH group of donors
1.1.1 With NAD+ or NADP+ as acceptor
1.1.1.35 3-hydroxyacyl-CoA dehydrogenase
HU773_019610 (fadB)
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.17 enoyl-CoA hydratase
HU773_019610 (fadB)
5. Isomerases
5.1 Racemases and epimerases
5.1.2 Acting on hydroxy acids and derivatives
5.1.2.3 3-hydroxybutyryl-CoA epimerase
HU773_019610 (fadB)
5.3 Intramolecular oxidoreductases
5.3.3 Transposing C=C bonds
5.3.3.8 Delta3-Delta2-enoyl-CoA isomerase
HU773_019610 (fadB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
3HCDH_N
ECH_1
3HCDH
ECH_2
NAD_binding_2
Motif
Other DBs
NCBI-ProteinID:
QXH87853
LinkDB
All DBs
Position
complement(4413091..4415238)
Genome browser
AA seq
715 aa
AA seq
DB search
MIYEGKAITVKALESGIVELKFDLKGESVNKFNRLTLNELRQAVDTIKADASIKGVIVSS
GKDVFIVGADITEFVDNFKLPDAELVAGNLEANKIFSDFEDLNVPTVAAINGIALGGGLE
MCLAADFRVMASSAKIGLPEVKLGIYPGFGGTVRLPRIIGADNAIEWIAAGKENRAEDAL
KVGAVDAVVAPEKLAEAALNLIKGAISGEFDYKAKRQPKLEKLKLNAIEQMMSFETAKGF
VAGQAGPNYPAPVEAIKTIQKAANFGRDKALEIEAAGFVKLAKTSAAQSLIGLFLNDQEL
KKKAKAYDEIAKDVKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKL
LVGRVDKGRMTAAKMAEVLNGIRPTLSYGDFGHVDLVVEAVVENPKVKQAVLAEVEAQVK
EDTILASNTSTISITLLAKALKRPENFVGMHFFNPVHMMPLVEVIRGEKSSELAVATTVA
YAKKMGKNPIVVNDCPGFLVNRVLFPYFGGFAKLVSAGVDFVRIDKVMEKFGWPMGPAYL
MDVVGIDTGHHGRDVMAEGFPDRMKDDRRSAVDALYEAKRLGQKNGKGFYAYETDKKGKQ
KKVADPSVHEVLAPIVYEQREVSDEDIINWMMIALCLETVRCLEDGIVETAAEADMGLVY
GIGFPPFRGGALRYIDSIGVAEFVALADQYADLGPLYHPTAKLREMAKNGQSFFG
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atgatttacgaaggtaaagccatcacggttaaggctcttgaaagtggcatcgtcgaattg
aaattcgacctcaagggtgagtccgtcaacaagttcaaccgtctaaccctgaacgaactg
cgtcaggccgtagacaccatcaaggctgatgcatcgatcaaaggtgtgatcgtctccagc
ggcaaggacgtgtttatcgtcggcgctgacatcaccgaattcgtcgacaacttcaagctg
cccgatgccgagcttgtggctggcaacctcgaagccaacaagattttcagcgatttcgaa
gacctcaacgtgccgaccgttgccgcgatcaatggcatcgctctgggcggcggtctggaa
atgtgcctggctgcggacttccgcgtcatggcttccagcgcgaaaatcggcctgccggaa
gtcaagctgggtatctacccgggtttcggcggtaccgtgcgcctgccgcgtatcattggt
gccgacaacgccatcgagtggatcgccgccggcaaggaaaaccgtgctgaagacgcgctg
aaagtcggcgccgtcgatgctgtggttgctccggaaaaactcgcagaagcggcactgaac
ctgatcaagggcgccatcagcggcgaatttgactacaaggccaagcgtcagcctaagctg
gaaaaactcaagctcaacgccatcgaacaaatgatgtcgttcgaaaccgccaagggtttc
gtggccggtcaagcgggccctaactacccggcgccggtcgaagcgatcaagaccatccag
aaagccgcgaacttcggtcgcgacaaggccctggaaatcgaagctgccggcttcgtcaag
ctggccaagacttctgctgcgcagagcttgatcggcctgttcctgaacgatcaggaactg
aagaaaaaagccaaggcctacgacgaaatcgccaaagacgtgaaacaggctgccgtactc
ggcgccgggatcatgggcggtggtattgcctatcagtcggcgtccaaaggcacgccgatc
ctgatgaaagacatcaacgagcacggtatcgagcaaggcctggcggaagctgccaagctg
ctggtcggccgcgttgataaaggtcgcatgaccgctgcgaaaatggctgaagtgcttaac
ggcattcgtcctacgctgtcctacggtgatttcggccacgtcgacctggtggtcgaagcg
gttgtcgagaacccgaaggtcaagcaggcggtactggctgaagtcgaagcccaggtcaaa
gaagacacgatcctggcgtccaacacctcgaccatttccatcaccttgctggccaaggcc
ctcaagcgtccggaaaacttcgtcggcatgcacttcttcaacccggtgcacatgatgccg
ctggtagaagtgatccgtggcgagaagtccagcgagctggctgttgccaccaccgttgcc
tacgccaagaaaatgggcaagaacccgatcgtggtcaacgactgcccgggcttcttggtc
aaccgcgtgctgttcccgtacttcggcggtttcgccaagctggtcagcgctggcgtggac
tttgtgcgtatcgacaaggtcatggaaaaattcggctggcccatgggcccggcgtacctg
atggacgtggtcggcatcgacaccggccaccacggtcgcgacgtcatggctgaaggcttc
ccggaccgcatgaaggacgaccgtcgttcggctgtcgatgcactctacgaagccaagcgc
ctgggccagaagaatggcaagggcttctacgcctacgagaccgacaagaagggcaagcag
aagaaagttgccgacccatcggtccacgaagtgctggcacccatcgtctacgagcagcgt
gaggtgtctgacgaagacatcatcaactggatgatgatcgccctgtgcctggaaaccgta
cgttgcctggaagacggcatcgtcgaaaccgccgccgaagccgatatgggcctggtgtac
ggtattggtttccctccattccgtggcggtgcgctgcgttacatcgactcgatcggtgtg
gccgagttcgttgccctggctgatcagtacgctgatctgggcccgctgtaccacccgact
gcgaagctgcgcgagatggccaagaatggccagagcttcttcggttaa
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