Pseudomonas shahriarae: HU773_020490
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Entry
HU773_020490 CDS
T07642
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pshh
Pseudomonas shahriarae
Pathway
pshh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pshh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HU773_020490 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pshh03019
]
HU773_020490 (rne)
03009 Ribosome biogenesis [BR:
pshh03009
]
HU773_020490 (rne)
Enzymes [BR:
pshh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
HU773_020490 (rne)
Messenger RNA biogenesis [BR:
pshh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HU773_020490 (rne)
Ribosome biogenesis [BR:
pshh03009
]
Prokaryotic type
rRNA processing factors
HU773_020490 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TcdA_TcdB
Motif
Other DBs
NCBI-ProteinID:
QXH88020
LinkDB
All DBs
Position
4613526..4616756
Genome browser
AA seq
1076 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDF
GSERHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISL
AGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLIAPADMGLIVRTAGLGRSSEEMQW
DLDYLLQLWTAIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALT
FIRQVMPQYASKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSID
INSARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKV
RECLEADRARVQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAI
LRLIEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIVILPNDHLETPHF
EVQRLRDDSPEAHSGQSSYEIAAAAAEVEEVQPAAATRTLVRQEAAVKTAPARANAPVPT
EVAAPVAAPAVLPEPSLFKGLVKSLVSLFATKEEPAAPAVVEKPAAERPARNEERRNGRQ
QSRNRNGRRDEERKPREERAPREERAPREERQPREAREETPAVAREERAPREERAPREER
APRAPRAPREDRKPRGEREERVRELREPLDAAPAVAAVATDAATEERPARQPREERAPRP
PREERQPRAEQAAAASEEELLNNDEQPQEDGQDNAEGDRPRRRSRGQRRRSNRRERQRDA
NGNVIEGSEETGEATEESANNEPTSTELAAGLAVTAAVASSVISAPAEAEANQQAERATA
AVQETAAVEAPVVEATTVVEAPAAVEVEVAPVREAQPEAEVVAAPAIVVEPQPVVEAVVE
APAAEATPEVREVREEQTAFQWTAEPAVVAEAPAPAPVEEAPAPVAEVVIAEPAVVAEPV
VVAEPAPVVVETPVVAEVVAPVVEAPVSALTENGRAPNDPREVRRRKREAERLQKEAEAA
AAAAPAVVEAVAPAPAIEAEVEHTAPTIDENLRSVEEVVEHNPKALEEEHEPKPLA
NT seq
3231 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctgattaacgcaactcaacccgaagagttgcgtgttgcactggtagat
ggccaacgcctctacgacctggacatcgagtccggtgcacgcgagcagaagaaggccaac
atctataaaggccggattactcgcatcgagccaagccttgaggctgcctttgtcgatttt
ggctctgagcgccatggcttcctgcccctcaaagaaatctcccgcgaatacttcaagaaa
gcccctgaaggccgcgtgaacatcaaggacgtcctgagcgaaggccaggaagtcatcgtc
caggtcgaaaaagaagaacgtggcaacaagggcgccgccctgaccaccttcatcagcctg
gctggccgttacctggtcctgatgccgaacaacccgcgtgccggcggcatctcccgtcgc
atcgaaggcgaagagcgcaacgaactgcgtgaagcgctgaacggcttgatcgctccggcc
gacatgggcctgatcgtgcgcactgccggccttggccgcagcagcgaagaaatgcagtgg
gacctcgattacctgctgcaactgtggaccgctattaaagaagcgtccctggaccgctcc
gcgccattcctgatctatcaggaaagcaacgtgatcatccgcgccatccgcgactacctg
cgccaggacatcggcgaagtgctgatcgacagcgttgaagcccaggacgaagccctgacc
ttcatccgccaggtgatgccgcagtacgccagcaagatcaagctgtacgaagacagcgta
ccgctgttcaaccgcttccagatcgaaagccagatcgaaaccgccttccagcgcgtggtc
gaactgccgtccggcggctccatcgtgatcgatccgaccgaagccctggtgtccatcgac
atcaactcggcgcgcgccaccaaaggcagcgacatcgaagaaaccgcgttgcagaccaac
ctggaagcagccgaagaaatcgcgcgccaactgcgcctgcgtgatatcggcggcctgatc
gtgatcgacttcatcgacatgaccccggccaagaaccagcgcgccgtggaagaaaaagtc
cgcgaatgcctggaagccgaccgtgcccgcgtacaagttggccgtatctcgcgcttcggc
ctgctggaaatgtcccgtcagcgcctgcgtccatccctgggcgaaagcagcggcatcgtc
tgcccgcgttgcaacggcaccggcatcatccgtgacgttgaatcgctgtccctggcgatc
ctgcgcctgatcgaagaagaagccctgaaagaccgcaccgccgaagtccgcgcacaagtg
ccgatcccggttgcagctttcctgctcaacgaaaaacgcaactcgatcaccaagatcgaa
ctgcgcacccgtgcccgtatcgtgatcctgccgaacgatcacctcgagacgccgcacttc
gaagtccagcgcctgcgtgatgacagcccggaagcccacagcggccagtccagctacgaa
atcgccgctgccgctgccgaagtcgaagaagtccagccagccgccgcaacccgcaccctg
gtgcgccaggaagccgcggtcaagaccgcaccggcccgtgccaacgcaccggtaccgact
gaagtcgccgccccggtggccgcgcctgccgtcctgccggagccaagcctgttcaagggc
ctggtgaagtcgctggtcagcctgttcgccaccaaggaagagcctgctgctccagccgtg
gtcgagaagccagccgctgaacgccctgcacgcaacgaagagcgtcgcaacggtcgccag
cagagccgtaaccgcaacggtcgccgtgacgaagagcgcaagcctcgcgaagaacgtgca
ccgcgtgaagagcgcgcaccccgtgaagagcgccagccgcgcgaagcccgtgaagaaacc
ccggccgtagcccgtgaagaacgtgctccgcgcgaagagcgtgcaccacgtgaagaacgc
gcaccgcgcgcccctcgcgcaccgcgtgaagatcgcaagccacgtggcgagcgtgaagag
cgtgtacgtgaactgcgtgaacctttggacgctgccccagctgttgccgccgtagcaact
gatgccgcgaccgaagaacgcccggcccgccagccccgtgaagaacgcgctccacgccca
ccgcgtgaagagcgtcaaccacgcgccgagcaggctgccgcagccagcgaagaagaactg
ctgaacaacgacgaacagccacaggaagatggccaggacaacgccgaaggcgatcgtcca
cgccgccgctcccgtggccagcgtcgccgcagcaaccgtcgtgagcgtcagcgtgacgcc
aacggcaatgtgatcgaaggctcggaagagaccggcgaagccactgaagaaagcgccaac
aacgaaccgaccagcaccgaactggctgctggcctggccgttaccgctgcagttgccagc
tcggtcatcagtgcacctgccgaagccgaagccaaccagcaggccgaacgtgccaccgct
gccgtgcaggaaactgccgcagttgaagcaccggttgtcgaagccaccaccgtggtcgaa
gcacctgccgctgtagaagttgaagttgcaccggtccgcgaagcccagcctgaagccgaa
gtagtggctgcacctgcaatcgtggttgagccccagcctgtggtcgaagctgttgtcgaa
gcgccagccgctgaagcaaccccagaagtgcgtgaagttcgcgaagaacagaccgccttc
cagtggactgccgagccggccgtcgtcgccgaagcacctgccccggcaccggtagaagaa
gctccagcaccggttgctgaagtggttatcgccgaaccagcggtggttgcagaaccggtt
gtggttgccgagcctgctccggtggttgtggaaaccccagtggttgccgaagtggtcgcc
ccagtggttgaagcccctgtcagcgccctgaccgaaaacggccgtgcgcctaacgacccg
cgtgaagtgcgtcgtcgcaagcgtgaagccgagcgtctgcagaaagaagccgaagcagca
gcggcggcggccccggccgtcgtcgaagcggttgcgccagcaccggccatcgaagcagaa
gttgagcacactgccccaaccatcgacgagaacctgcgttccgttgaagaagtggtagag
cacaacccaaaagccctggaagaagagcacgagcctaaacccctcgcttaa
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