Pseudomonas shahriarae: HU773_023420
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Entry
HU773_023420 CDS
T07642
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
pshh
Pseudomonas shahriarae
Pathway
pshh02020
Two-component system
pshh02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pshh00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
HU773_023420
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
HU773_023420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pshh03021
]
HU773_023420
Transcription machinery [BR:
pshh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HU773_023420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_IclR
HTH_21
Motif
Other DBs
NCBI-ProteinID:
QXH88565
LinkDB
All DBs
Position
5246065..5247558
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AA seq
497 aa
AA seq
DB search
MKPSLVLRMGQQLTMTPQLQQAIRLLQLSTLDLQQEIQEALESNPMLERQEEGDDFDNAD
PLADNIEQKPNPDVQEPSYQETAPTVDNLEEGEWNERIPNELPVDTAWEDVYQTSASSLP
SNDDDEWDFTTRTSVGESLQSHLLWQLNLAPMSDTDRLIAVTLIDCINNQGYLDETLEEI
LEAFDPELDIELDEIEAVLHRIQQFEPAGIGARNLSECLLLQLRQLPAKTPWLAEAQRLV
TDYIDLLGSRDYSQLMRRMKLKEDDLRQIIELVQSLNPRPGSQIESSEAEYVVPDVIVRK
DNERWLVELNQESVPRLRVNPQYAGFVRRADTSADNTFMRNQLQEARWFIKSLQSRNETL
MKVATQIVEHQRGFLEYGDEAMKPLVLHDIAEAVGMHESTISRVTTQKFMHTPRGIYELK
YFFSSHVSTSEGGECSSTAIRAIIKKLVAAENQKKPLSDSKIAGLLEAQGIQVARRTVAK
YRESLGIAPSSERKRLM
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccatcgctagtcctgagaatgggccagcagctgacgatgacaccgcagctgcaa
caggccatccgcctgctccaattgtcgaccctggacctgcaacaggaaatccaggaggcc
ctggagtccaacccgatgctcgaacgccaggaagaaggcgacgacttcgataatgccgac
ccactggccgacaacatagagcaaaaacccaatcccgacgtccaggagccgtcctaccag
gaaaccgcacccacggtggataacctggaagaaggcgaatggaacgaacgtattcccaat
gaactgccggtggatacggcctgggaagatgtctaccagaccagcgccagcagcctgccc
agcaacgacgatgacgagtgggacttcaccacccgcacctccgtcggcgaaagcctgcag
agccacttgctgtggcaactgaaccttgccccgatgtccgacaccgatcgcttgatcgcg
gtgaccctgatcgactgcatcaacaatcagggctatctggacgagaccctcgaagaaatc
ctcgaggctttcgacccggaactggacatcgagctggacgaaatcgaggcggtcctgcac
cgcatccagcagttcgagcccgccggcatcggcgcgcgcaacctcagcgagtgcctgttg
ctgcaactgcgccaactgcccgccaagacaccgtggctggccgaagcccaacgcctggtc
accgactatatcgacctgctgggcagccgcgactacagccagttgatgcgtcggatgaag
ctcaaggaagatgacctgcgccagatcatcgaactggtacagagcctcaacccgcgtccc
ggctcgcagatcgagtccagcgaagccgagtatgtcgtccccgacgtgatcgtgcgcaag
gacaacgagcgctggctggtggagctgaaccaggaatcagtgccgcgcctgcgggtcaac
ccgcaatacgcaggttttgtacgccgggccgacaccagcgccgacaacaccttcatgcgc
aatcagttgcaggaggctcgctggttcatcaagagcctgcaaagccgcaacgagaccctg
atgaaagtggccacccagatcgtcgagcatcagcgcggcttcctggaatatggcgacgag
gcgatgaaaccgttggtgctgcatgacattgccgaagcagtgggcatgcacgaatcgacc
atttcccgggtcaccacccaaaaattcatgcataccccacggggtatatatgagctgaaa
tactttttctccagccacgtcagcacctccgaaggcggtgaatgctcgtccacggcgatc
cgcgcgatcatcaaaaaactggttgcggcggaaaatcagaaaaagccgttgagtgacagc
aagatcgctggtttactggaggcacaaggcattcaggtcgcccgtcgaaccgtcgccaag
taccgcgagtcccttgggatcgcgccttccagcgagcgtaagcgattgatgtga
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