Pseudomonas shahriarae: HU773_024645
Help
Entry
HU773_024645 CDS
T07642
Name
(GenBank) sigma-54-dependent Fis family transcriptional regulator
KO
K21405
sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
Organism
pshh
Pseudomonas shahriarae
Brite
KEGG Orthology (KO) [BR:
pshh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pshh03000
]
HU773_024645
Transcription factors [BR:
pshh03000
]
Prokaryotic type
Helix-turn-helix
Other families
HU773_024645
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
HTH_8
AAA_lid_14
PAS_4
AAA_5
PAS_9
PAS_7
HTH_23
HTH_50
AAA_2
PAS
AAA
HTH_7
PAS_8
HTH_30
HTH_17
HTH_28
HTH_AraC
HTH_22
RWP-RK
DUF7317
HTH_20
RsmI_C
IclR_C
nSTAND3
Mga
Motif
Other DBs
NCBI-ProteinID:
QXH88791
LinkDB
All DBs
Position
complement(5501548..5503461)
Genome browser
AA seq
637 aa
AA seq
DB search
MQNDHFSRHARQVLTVTRGQDPLHGPGSDPSIARSWLRCLEDYHLDPALTIAPTVLEHDR
LLESRERLQQVLHIAGTEMNNLHQQLSGAGHAVLLTDARGVILNCVTAPSERKVFEHAGL
WLGADWSEACEGTNGIGTCLVERQALTIHRDEHFRGRHTGLTCSASPVFDPHGDLLAVLD
VSSAREAVSRQSQFHTMALVNLSAKMIESCYFLRHFENHWLLRFHLQAESVGLFSEGLLA
FDGEGRICALNQSAQNLLGLPRGRLLGLPVEMFFDCRLDDLLGRASANASASWPLRTRDG
RSLFAVLRGEARRAPGPRVPAPPKVERPRVPGICLGDEALQNDFRKALRVFERDVPLLIN
GETGSGKEAFAKAVHHASQRADKPFVALNCAAIPESLIESELFGYRGGSFTGSRKEGMRG
KLQQADGGTLFLDEIGDMPLALQTRLLRVLEDRLVVPIGGEPQAVDVRVISATHRNLQER
VRDASFREDLYYRLNGLEIALPPLRERTDKSQLLDFLLAQEAQGQTIVLDDDARQALLDF
SWPGNVRQMRTVLRTLAALCEGARVGLSDLPAIIGRVPVQARTVVKQPLEDAERLALLNM
LEQQRWHMTLAAEQLGISRNTLYRKLRKHGIALRSAG
NT seq
1914 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaacgatcatttcagccgccatgcccggcaagtcctgacggtcacccgtgggcaa
gacccgctgcacggtcccggcagcgatccctcgattgcccgttcctggctgcgctgcctg
gaggactatcacctcgacccggcactgaccattgcccccacggtgctggagcacgatcgc
ctgctggaaagccgcgagcgcctgcagcaggtgctgcacatcgccggcaccgaaatgaac
aatttgcatcaacagctttccggcgccgggcacgcggtgctgttgaccgatgcgcgcggg
gtgatcctcaactgcgtcaccgcgcctagcgagcgtaaggtgttcgagcatgccggccta
tggctcggcgctgactggagcgaggcctgtgaaggcaccaacggcatcggcacctgcctg
gtggagcgccaggccctgaccattcatcgcgatgaacactttcgcgggcgccacaccggc
ctgacctgttccgccagcccggtattcgacccccatggcgacctgctggcagtgttggac
gtgtcctcggcccgtgaggcggtatcgcgtcagagccagttccataccatggcgctggtc
aatctgtcggcgaagatgatcgagagctgctacttcctgcgccactttgaaaaccactgg
ttgctgcgtttccacctgcaggccgaatccgtgggcctgttcagcgaagggctgctggcg
ttcgacggtgaagggcggatctgtgcgctcaaccaaagcgcgcagaacctgctggggctg
ccacgcgggcgtttgctgggcctgccggtggagatgtttttcgactgccgcctggatgac
ttgctcggccgcgccagtgccaacgccagcgccagttggcccctgcgcacccgcgatggg
cgcagcctgttcgcggtgttgcgcggcgaggcccggcgggcgcccggcccacgggttccg
gcgccgcccaaggtcgagcggccgcgcgtgccgggcatctgcctgggcgatgaggcgctg
cagaatgactttcgcaaggccctgcgggtctttgagcgcgacgtgccgctgctgatcaat
ggcgaaaccggctccggcaaggaggcattcgccaaagccgtgcaccatgccagccagcgt
gccgacaaacccttcgtcgccctgaactgcgcggccatccctgagagcctgatcgagagc
gaattgttcggttatcgcggtggcagtttcaccggctcccgcaaggaaggcatgcgcggc
aagctgcaacaggccgatggcggtaccttgttcctcgatgaaatcggcgatatgccgctg
gcgttgcagacccggttgctaagagtgttggaagaccggctggtggtgcccattgggggt
gagccgcaagcggtggacgtgcgggtgatcagcgcgacgcaccgcaacttgcaggaacgt
gtgcgtgacgccagtttccgcgaggacttgtattaccggctcaatggcctggaaatcgcc
ttgccgccgttgcgcgagcgcactgacaagtcgcagttgctggactttctcctggcgcag
gaagcgcaggggcagacaatcgtacttgatgacgatgcgcgtcaggcactgttggacttc
tcgtggccgggtaacgtgcgacagatgcgcacggtgttgcgtacgttggctgcactctgc
gagggcgcacgggtcgggttgagcgatctgcctgcgataattggccgggtgcctgtccag
gcgcgaaccgtcgtcaagcagccgttggaagatgccgagcggctggcattgctgaacatg
ctggagcagcagcgctggcatatgacccttgctgcagagcagttgggcattagccgcaat
acgctgtaccgcaagctgcgcaagcatggaattgcgttgcgttctgcgggctga
DBGET
integrated database retrieval system
