Pseudomonas shahriarae: HU773_026165
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Entry
HU773_026165 CDS
T07642
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pshh
Pseudomonas shahriarae
Pathway
pshh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pshh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HU773_026165
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pshh03019
]
HU773_026165
Enzymes [BR:
pshh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HU773_026165
Messenger RNA biogenesis [BR:
pshh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HU773_026165
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
QXH89080
LinkDB
All DBs
Position
5819605..5821485
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AA seq
626 aa
AA seq
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MSFASLGLSEALVRAIEAAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKLYARDLKFVSACIFGGVGMN
PQVQAMSRGVDVLVACPGRLLDLCGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR
LPAKRQNLLFSATFSNDITALAGKLLHNPERIEVTPPNTTVERIEQRVFRLPASHKRSLL
AHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLTAVAIHGNKSQNARTKALADFKAGSV
RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL
LKSIERMTKQKIADGDLMGFDASTVEAEKPEVRERPDVRNPRNPRGPKGDGPNGGGGGGG
RRDKGKDKGGKDKAPTNGRGERPAREQKPREGTPAREQRQPSQPPRAAADRAPDEFLDDD
VDNFGNRVDYVPQAKPAQGRGRRPGAPAPGAGAGAPRTGGQPQGRQNGPRSSNGATTGTP
PAKRNGPRNGAPRDGQARREESRNRRPARDEQPRSSEPAVQNPRSGTTPKIIHKESKSDR
FPTPEQLDQLPGRPRGEKPALLTRNR
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcttccctcggtctctccgaggctttagtccgcgccatcgaggcagcgggc
tataccgagcctactccggtgcaacagcgggctattcccgccgtgttgcaaggtcgcgac
ctgatggtcgcggctcagacaggtactggtaaaaccggcggcttcgccctcccgattctg
gagcggttgttccccaatggtcacccggacaaatcccagcgtcacggcccgcgccaaccc
cgcgtactggtcctgacccctacccgcgaactcgccgcacaagtgcatgacagcttcaag
ctgtacgcccgcgacctgaagttcgtcagtgcctgcatcttcggcggcgttggcatgaac
ccccaggttcaggccatgtcccgtggggttgacgtgctggtcgcctgccctggtcgtttg
ctcgacctgtgtggccaaggcagcgtcgatctgtcccacgtggaaatcctcgtgctggac
gaagccgaccgcatgctcgacatgggctttgtccatgacgtgaagaaagtcctcgcgcgc
ctgccggccaagcgtcagaacctgctgttctcggcaacgttctccaacgacatcaccgcc
ctggccggcaagctgctgcacaaccccgagcgcatcgaagtcacgccgcccaacaccacg
gtcgagcgtatcgagcagcgggtgttccgcctgccagccagccacaagcgctcgctgttg
gcccacctgattaccgccggtgcctgggaacaagtgctggtgttcacccgcaccaagcat
ggcgccaaccgcctggccgagtacctggacaagcacggcctgaccgccgtcgccatccac
ggcaacaagagccagaacgcgcggaccaaggccctggccgacttcaaggccggctccgta
cggatcctggtcgccaccgatatcgccgcccgcggcctggatatcgaccaactgccgcat
gtggtcaacttcgagctgccaaacgtcgatgaagactatgtgcaccgtatcggccgtact
ggccgtgccggtcgttcgggcgaggccatttccctggtcgccccggatgaagaaaaactg
ctgaaaagcatcgagcgcatgaccaagcagaaaatcgccgacggcgacctgatgggcttc
gatgccagcaccgtagaagccgaaaaaccggaagtgcgcgagcgtccggacgtgcgtaac
ccgcgcaacccacgtggtcctaagggcgatggcccgaacggcggcggtggtggcggtggt
cgtcgcgacaaaggcaaggacaaaggtggcaaagacaaggcacctaccaacggccgtggc
gaacgcccagcccgcgagcaaaagccccgcgaaggcaccccggcccgcgaacagcgccag
ccgagccagccgccacgcgccgcagccgaccgcgcaccggacgagttcctcgacgatgac
gtggataacttcggtaaccgcgtggactacgtgccacaggccaaaccggcccagggccgt
ggtcgtcgtccaggtgccccggcaccgggcgctggtgcgggcgctccgcgcaccggcggc
cagccacagggtcgccagaacggtccgcgcagcagcaacggcgccaccaccggcacccca
ccggccaagcgcaatggtccgcgtaacggcgcaccgcgtgatggccaggcccgtcgcgaa
gagtcgcgcaaccgccgccctgcacgtgatgagcagccacgctcctcggaacctgccgtg
cagaacccgcgcagcggcacgacgccgaagatcatccacaaggagtcgaaaagcgatcgc
ttcccgacacctgagcagttggatcaactgccaggccgccctcgtggtgaaaaaccagcg
ttgctgacccgcaaccgctga
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