Pseudomonas shahriarae: HU773_027000
Help
Entry
HU773_027000 CDS
T07642
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
pshh
Pseudomonas shahriarae
Pathway
pshh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pshh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HU773_027000 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pshh03021
]
HU773_027000 (rho)
03019 Messenger RNA biogenesis [BR:
pshh03019
]
HU773_027000 (rho)
Transcription machinery [BR:
pshh03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
HU773_027000 (rho)
Messenger RNA biogenesis [BR:
pshh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HU773_027000 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_25
AAA_22
S1CSD-TOTE-2
NACHT
Spore_III_AA
Motif
Other DBs
NCBI-ProteinID:
QXH89240
LinkDB
All DBs
Position
complement(5990811..5992070)
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTELKQKPITDLLQLAEEMGIENMARSRKQDVIFSLLKKHAKSGEEISGDGVLEILQD
GFGFLRSADASYLAGPDDIYVSPSQIRRFNLRTGDTIVGKIRPPKEGERYFALLKVDTIN
FDRPENAKNKILFENLTPLFPTVRMKMEAGNGSTEDLTGRVIDLCAPIGKGQRGLIVAPP
KAGKTIMLQNIAANIARNNPEVHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPPTRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEKPKRF
FGAARNIEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNMELPLDRRIAEKRVFPAINI
NRSGTRREELLTADDELQRMWILRKLLHPMDEVAAIEFLIDKLKTTKTNDEFFLSMKRK
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatctgactgaactcaagcaaaagccgattaccgacctgctccaactggccgaagaa
atgggcatagaaaatatggcccgttcgcgcaagcaggacgtgattttctccctgctgaaa
aagcacgcgaaaagcggcgaggaaatctccggtgatggcgtgctggagattctccaggac
ggcttcggcttccttcgctctgcagacgcgtcctatctcgccggcccagacgatatctac
gtctcgccgagccagatccgtcgcttcaacttgcgcaccggtgacaccatcgttggcaag
atccgccctccaaaggaaggtgagcgttatttcgccctgctcaaggtcgacacgatcaac
ttcgatcgtcctgagaacgcgaagaacaagattctcttcgagaacctgacgccgctgttc
ccgaccgtgcgcatgaagatggaagccggtaacggttccaccgaagacctgaccggtcgt
gtgatcgacctgtgcgctccgatcggcaaaggccagcgtggcctgatcgtcgcaccgccg
aaagccggtaagaccatcatgctgcagaacattgcagcgaacatcgcgcgtaacaatcct
gaagttcacctgatcgtgctgctgatcgatgagcgtccggaagaagtcaccgaaatgcag
cgcaccgtgcgcggcgaagtggttgcctcgacgttcgatgaaccgccaacccgccacgtg
caggttgccgaaatggtgatcgagaaggccaagcgcctggtcgaacacaagaaggacgtg
gtgatcctgctcgactccatcacccgtctggcccgtgcctacaacaccgtgatcccgagc
tccggcaaggtattgaccggtggtgtcgatgcccacgccctggagaagccgaaacgtttc
ttcggcgccgcgcgtaacatcgaagaaggcggctcgctgaccattatcgccaccgcgctg
gttgaaaccggctcgaagatggacgaagtgatctacgaagagttcaagggtaccggcaac
atggaactgcctttggaccgtcgcatcgctgaaaagcgtgtgttcccggccatcaacatc
aaccgctccggcacccgccgcgaagagttgctgaccgccgacgacgaactgcagcgcatg
tggatcctgcgcaagctgctgcacccgatggacgaagtggcagccatcgagttcctgatc
gacaagctgaaaaccaccaagaccaacgacgagttcttcctgtcgatgaaacgtaagtaa
DBGET
integrated database retrieval system
