Plesiomonas shigelloides: SAMEA2665130_0451
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Entry
SAMEA2665130_0451 CDS
T04378
Symbol
rpoD
Name
(GenBank) Sigma-70
KO
K03086
RNA polymerase primary sigma factor
Organism
pshi
Plesiomonas shigelloides
Pathway
pshi02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pshi00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
SAMEA2665130_0451 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pshi03021
]
SAMEA2665130_0451 (rpoD)
Transcription machinery [BR:
pshi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
SAMEA2665130_0451 (rpoD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
SQS_PSY
HTH_SUN2
DNA_ligase_A_N
TMEM120A-B
Motif
Other DBs
NCBI-ProteinID:
SBT60027
UniProt:
A0A379CK50
LinkDB
All DBs
Position
1:complement(485765..487612)
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AA seq
615 aa
AA seq
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MEQNPQSQLKLLVTKGKEQGYLTYAEVNDHLPEDMVDSDQIEDIIQMINDMGIQVLEEAP
DADDLMLAENLADDDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIA
KRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAGTSRLSDLITGFVDPNAEEDMAPTATH
VGSELSEEHLADEDLDDDEEEEESDDSSDDDGTIDPELAREKFTELRDQYEVTRLAIKAN
GRNHPVTNEEIQKLSEVFKQFRLVPKQFDHLVNAMRSMMERVRTQERIIMKLCVEQCKMP
KKNFVTLFSGNETNPQWMEKALAAGKPWSMRLSEVNEEVQRCLQKMRQIEEETGLTIEQV
KDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDK
FEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREP
SPEELAERMMMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATSE
SLRNATRDVLEGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKL
RHPSRSEVLRSFLDE
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaaacccgcagtcgcagcttaagcttcttgttaccaagggtaaagagcaaggc
tacctgacctatgccgaggtcaatgaccacctgccggaagatatggtcgactccgatcaa
atcgaagacattatccagatgatcaacgacatgggtattcaggtgctggaagaagcaccc
gatgccgatgacctgatgctggcagaaaacctcgcggatgacgacgcagcagaagccgct
gcgcaagtgctgtccagcgtggaatctgagatcggacgaaccacggacccggtgcgcatg
tacatgcgcgaaatgggcaccgtagaactgcttacccgtgagggtgagatcgatatcgcc
aaacgtattgaagacggtatcaaccaagtacagtgctctgttgcagagtatccagaagcg
attacctatcttctggagcaatatgatcgcgtcgaagcgggcacctcccgtctgtctgac
ctgatcaccggctttgtcgacccgaatgccgaagaagatatggcacctacggcgacccac
gtcggctctgagctgtctgaagagcatctggcggatgaggatctggatgacgacgaagag
gaagaagagagtgatgattcttccgacgacgacggcaccatcgatccggagctggcgcgc
gagaagttcactgaactgcgcgatcagtatgaagttacccgtttagcgatcaaagccaac
ggtcgtaaccatccggttaccaacgaagagattcagaagctgtctgaagtcttcaagcag
ttccgtctggttccaaagcaatttgaccatctggtaaacgctatgcgttccatgatggag
cgtgtccgtactcaggaacgcatcatcatgaaactgtgtgtggaacagtgcaaaatgccg
aagaaaaacttcgtcactttgttctcgggtaatgaaaccaatccacagtggatggaaaaa
gcactggccgccggtaaaccgtggtcaatgcgtttaagtgaagttaatgaagaagtgcag
cgttgcctgcaaaagatgcgtcagatcgaagaagaaacgggtctgactatcgagcaggta
aaagatatcaaccgtcggatgtctatcggtgaagcgaaagcgcgccgtgcgaagaaagag
atggttgaagcaaacctgcgtctggttatttcgattgccaagaaatacaccaaccgcggc
ctgcagttcttggatctgatccaagaaggtaacatcggtctgatgaaagcggtggataag
tttgaataccgccgtggttataagttctcgacctatgcgacttggtggatccgtcaggct
atcacccgctctatcgcggatcaggcgcgcaccatccgtattccggtgcacatgatcgaa
accatcaacaagctgaaccgtatttcacggcagatgctgcaagagatgggtcgtgagccg
agccctgaagagctggctgagcgcatgatgatgccagaagacaagatccgcaaagtgctg
aagattgccaaagagccaatctccatggaaaccccaatcggggatgatgaagattcgcat
ctgggtgatttcatcgaggatactaccctcgaactgccattggattcggccacctcagaa
agcctgcgcaacgccactcgcgatgtgctggaaggtctgacggcgcgtgaagccaaagtg
ctgcgtatgcgtttcggtatcgatatgaacaccgaccacacgctggaagaggtaggtaag
cagtttgacgtaacgcgtgagcgtatccgtcagattgaagccaaggcactgcgcaaactg
cgccatccgagccgctcggaagtgctgcgtagcttcctcgacgaataa
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