Plesiomonas shigelloides: SAMEA2665130_0662
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Entry
SAMEA2665130_0662 CDS
T04378
Symbol
sbcD
Name
(GenBank) Nuclease sbcCD subunit D
KO
K03547
DNA repair protein SbcD/Mre11
Organism
pshi
Plesiomonas shigelloides
Brite
KEGG Orthology (KO) [BR:
pshi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pshi03400
]
SAMEA2665130_0662 (sbcD)
DNA repair and recombination proteins [BR:
pshi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
SAMEA2665130_0662 (sbcD)
Archaeal homologous recombinant proteins
SAMEA2665130_0662 (sbcD)
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
SbcD_C
Metallophos
Motif
Other DBs
NCBI-ProteinID:
SBT60220
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All DBs
Position
1:727486..728769
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AA seq
427 aa
AA seq
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MSKQKLKIIHTADWHLGHHLHGYDRSAEHQAFLDWLLETLIAEQADALLVSGDLFDSANP
PAAAWQMLYRFLAEVTRRLPALNVVMVGGNHDSPSKLDAPHELLRAFNLHLIGAVSRDSH
GQLDCERLLVPLYDRAQQLQGWVLAVPFLRSADLRTPARDVEPEHEASEQEEDRLISGVR
EIYRQVTQAALDKASADQVPLLAMGHAYMSAGQLSEMSERRVLGGNQHALPVDIFSPQLS
YVALGHLHLAQRVGGQEHIRYSGSPLPLSLAEHEYRHQVLRCEFEGAALSSVTALPVPRY
CDMLRLPTRPADLDTVLAQLRALDLPPVDLARRPYLDVQLLLDKPQALIREKVLAALEDK
PVRLAKISVSYPPRSQAQGAPLPRLAELTPEQAFRLCYQRRFDGEPAPQLQQLFSELVQQ
VDEEELP
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagcagaaactcaaaattatccatacggcagattggcatctggggcatcacctg
catggttatgaccgcagtgccgagcatcaggcctttttagactggttgttggaaaccttg
attgccgagcaagccgatgccctgttggtcagtggcgatctgtttgattcggcgaacccg
ccggcggcagcgtggcagatgctgtaccgctttttggccgaggtaacgcgccgcttaccg
gcgctgaatgtggtgatggtgggcggtaaccatgattcaccgagtaaactggatgcccca
catgagctgctgcgcgcctttaatttgcacttaattggcgcggttagccgcgatagtcat
ggccagcttgattgtgagcgcctgctggtgccgctgtatgaccgtgcgcaacaactgcaa
ggttgggtactggcagtgccatttttacgcagtgccgatttgcgaacccctgcgcgcgat
gttgagcctgagcatgaagccagcgagcaggaagaagatcgtttgattagcggtgtgcgc
gagatctatcggcaggttacgcaggcggcactggataaagccagcgcagaccaagtgccg
ttattggcgatgggacatgcctatatgtcggccggacagctatccgagatgtcggagcgc
cgagtgctgggcggtaatcagcatgcgctgccggtcgatattttctcgccacagctgagc
tatgtggcgctgggccacctgcatctggcgcagcgcgtaggcggccaagagcacattcgt
tatagcggctcaccactgccgttgtcgctggcggaacatgagtatcgtcaccaagtgctg
cgctgcgaatttgagggcgcggcgctgagttcagtgactgcgctgccggtcccccgttat
tgcgacatgctgcgcttaccgacgcgtccggcggatttagacacggtgttggcgcagtta
cgtgcgctggatttaccgccggtggatctggcacggcgtccgtatctggatgtgcagctg
ttgctggataagccgcaggcgctgatccgcgaaaaagtcttggcagcgctggaggataaa
ccggtgcggctggctaaaatcagtgtgagctatccaccgcgtagccaagcgcagggcgcg
ccgttgccgcgtttggcagaactaacgccagagcaggcgtttcgcctatgttatcagcgc
cgttttgacggtgagccggccccccaactacaacagctgtttagtgaactggtgcaacag
gtggatgaagaggagttgccatga
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