Plesiomonas shigelloides: SAMEA2665130_0663
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Entry
SAMEA2665130_0663 CDS
T04378
Symbol
sbcC
Name
(GenBank) Nuclease sbcCD subunit C
KO
K03546
DNA repair protein SbcC/Rad50
Organism
pshi
Plesiomonas shigelloides
Brite
KEGG Orthology (KO) [BR:
pshi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pshi03400
]
SAMEA2665130_0663 (sbcC)
DNA repair and recombination proteins [BR:
pshi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
SAMEA2665130_0663 (sbcC)
Archaeal homologous recombinant proteins
SAMEA2665130_0663 (sbcC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
SMC_N
AAA_29
AAA_21
PKcGMP_CC
ABC_tran
ABC_ATPase
nSTAND3
MeaB
AAA_22
AAA_15
DUF87
Motif
Other DBs
NCBI-ProteinID:
SBT60221
LinkDB
All DBs
Position
1:728766..732551
Genome browser
AA seq
1261 aa
AA seq
DB search
MKILSLRGENLASLQQPFTIDFDGRILGEAGLFAITGNTGAGKSTLLDAICLALFDRMPR
LQSNRKNDAQIGRDDDSNRIAANDVRNILSRGAAEGFAEVDFLAEDGQRYRAHWTVRRAR
GRIDGRLQQSEMWLENLADGVRFAGKKTEVLVRIEQLLGLSFEQFQRAVLLPQGEFAAFL
KANADERAALLERMTGGEIYSRLSQAAYERARSEEQALSQLSAQLGDLQLLPDEEQVALE
QQSEQLHRRLAAHEQQMETVRAQQQILQRDSELQAAVASGEAHLQTLQARLQSWEGRRQA
LQDVERVQSARLPLNRLMEARLQHQRSEDKLTQQQALVAESERLLTDIRQQADLAEQAWQ
KAELSWTQIEPKLKQGALLEQQIDSVQRRQQEKQRELRQQQDALQSELQARESLSRLITE
RKRALTDIEVLLQPLHALAPIAPQFKPLQEMLEQYRRTQQQLTEWRVQEQELIQRQPYQE
AALNAQQRQIDSINTQLQQLGEAPDEHSRSQAYLEQQSLQQQQALILSQLERVQRLAARS
DNWLHLSQLIARQQDDEQRVSARLEEARQQIAAQEINRIQLRAQHGEAEQALRQMLATAQ
LDEFRPLLKPEQPCPLCGSLTHPYREHAPQLHSLLSRQQQRLRELEAALRQSETEIQALQ
HWLQQAAQEQPLRQRQLNQWLEQLQACERDIAPLCVELGLEEIWQMLSVEQDAASWQRQL
QQTALHWQKQAQQAELHSERLHIEQRRYEQVQQQRLQLSHQLATERQALARLEQEQLQQR
EQLTHLQAQLQREQLQQTERAESLDRQFGPAPVGTLRWREWIGQSYAGQHLQMLAQQVAQ
YQKLTEELARVQLQLHEHEPKLAELQARIAEKQARWQAEQDQVQQLQQEQATLQQQRRAL
LGDMPLARLEEQARTARQSAELRRRQTQNQLQASQQKISAEQAALATLDEQHQQNAAQLR
QVLADWMHCQQELELNEQTLLHLLSFDEAWLQHERAELQTLEQELQQASTRLQERQQQRQ
ALAQQVAQASDSLQQLAQTHQLTMETLLTGLQQQLELLRNQEFELKSRLRQADEARQRAG
NLRDAIAQQQQRTEQWLQLSDLIGSATGNKFRTFAQGLTLEQLLLAANEHLNALAPRYAL
MRVPGSTLALQVVDHDMGDEVRAVESLSGGETFLISLALALALASLCADTRRLGSLFIDE
GFGTLDPDSLEQALACLDALQADGRQIGVISHVSTLVERIGTRIAVESLGGGRSRIRVLN
Q
NT seq
3786 nt
NT seq
+upstream
nt +downstream
nt
atgaaaattctgagtctgcgcggtgagaatctggccagcttgcagcagccgttcacgatt
gattttgatggccgcattttaggtgaggcggggctgtttgccatcaccgggaataccggt
gccggtaaaagtactttgctggatgcgatttgtctggcgctgtttgatcgtatgccacgt
ctgcaaagtaaccgcaaaaatgatgcgcagattggccgtgatgatgacagtaatcggatt
gcggccaatgacgtgcgtaatattctcagccgcggcgcagccgagggttttgctgaggta
gattttctggctgaagatggccaacgttatcgcgctcattggacagtgcgccgcgcccgt
ggacgcatcgatgggcgcttgcagcaaagcgaaatgtggctagaaaatctggccgatggc
gtgcgctttgccggtaagaaaaccgaagttttggtgcgcattgagcagttgcttgggctg
tcctttgagcagtttcagcgcgccgttttactgccgcagggcgagtttgccgcctttttg
aaagccaatgccgatgagcgtgccgcgttacttgagcgcatgaccggcggtgagatttac
tcgcggctgtcacaagcggcctatgagcgcgcgcgcagcgaagagcaagcgctcagtcag
ttatcggcgcagctcggtgatttacagctgttacctgatgaagagcaagtggcgctggag
cagcaaagtgagcagttacatcgccgcttggccgcccacgaacagcagatggaaacggtg
cgcgcccagcagcaaattttgcagcgcgatagcgaattacaggcggcggttgccagtggc
gaagcgcatctgcagactttacaagcgcgcttacagagctgggagggtcgtcgtcaggcg
ctgcaagatgtcgagcgggtgcaaagtgcccgtttgccattaaaccgtttgatggaagcg
cgtctgcaacaccagcgctccgaagacaaactcacccagcagcaggcgctggtggcggaa
agtgagcgattactgacagatattcgccagcaggccgatcttgccgagcaggcatggcaa
aaagccgaactgagttggacgcaaatcgagccgaagctcaagcaaggggcgctgttagag
caacaaatcgacagtgttcagcgccgacagcaagaaaaacagcgtgaattacgtcagcag
caagatgcattacaaagtgaattgcaagcgagagaaagcctgtcgcgcttgataactgaa
agaaagcgagcgcttactgacatcgaggtgttattacagccgctacacgcgttggcaccg
atcgccccgcagtttaaaccgctgcaagagatgctcgaacaataccgccgcacgcagcaa
cagctcaccgagtggcgtgtgcaggagcaagagctgattcagcgccagccttatcaagag
gccgcgctcaacgctcagcagcgtcagattgacagcatcaatacacagttgcagcaattg
ggagaagcgccggacgaacatagccgctcgcaggcctatttagagcagcaaagtttgcag
caacagcaggcgctgattttaagtcagttggagcgagtgcagcggctggccgcccgtagt
gacaactggctgcatctgtcgcaactgattgctcgtcagcaggatgatgagcaacgagtg
agcgcacgccttgaagaagcccgtcagcaaattgccgcgcaagagatcaatcgcatccag
ttgcgcgcccagcatggggaagcggagcaggcgttgcgccagatgctggccaccgctcag
cttgatgagtttcgccctctgctcaaacctgagcagccgtgtccgctgtgtggctccttg
acgcatccgtaccgagaacatgcaccgcagttgcacagtttgcttagccgtcagcagcaa
cggttgcgtgagttggaagcggcattgcggcaaagcgaaacggaaatccaagccttacag
cactggttacagcaagcggcgcaagagcaaccgctgcgccagcgtcagctcaatcagtgg
ctagagcagttgcaggcctgtgagcgtgacattgctccgctgtgtgtcgaattagggctg
gaggagatctggcagatgttgagcgtcgagcaagatgccgccagctggcagcgacaatta
cagcaaaccgcattgcactggcaaaagcaggcacagcaggctgagctgcacagcgagcgg
ctgcacatcgagcagcgccgttatgagcaggtccagcagcagcgtttgcaactatcgcat
caattagccaccgaacgccaagctctggcgcgactggagcaagagcaactgcagcaacgg
gagcaattaacgcatctgcaagcgcaattgcagcgtgagcagttgcaacaaaccgagcgc
gccgagagtttggatcgtcaatttggtcctgcgccagtgggcactttgcgttggcgcgag
tggattggtcagtcttatgccggtcagcatttacagatgttggcgcagcaagtggctcaa
tatcaaaagttgaccgaagagctggcccgagtgcagttgcagctgcatgagcatgagccg
aagctggctgaattgcaggcgcggatcgcggaaaagcaagcgcgttggcaagctgagcaa
gatcaggtgcaacagctgcagcaagagcaggcaacattgcaacagcagcggcgcgcgctg
ctgggtgacatgccgttggcacgtttggaagagcaagcgcgcacggcgcggcaaagcgct
gaactgcgccggcgtcagactcagaaccagttgcaagccagccagcaaaaaatcagcgcc
gaacaggccgcactggctaccttggatgagcagcatcagcaaaatgctgctcaattgcgc
caagtgttggccgattggatgcactgccagcaagagctggaactcaatgagcagaccttg
ttacatctgctgagttttgatgaagcgtggctgcagcacgagcgtgccgagctgcaaacg
ctggagcaagagttgcaacaagccagcacgcgcttgcaagagcgccagcagcagcgtcaa
gcgttagcgcagcaagtcgcacaagccagtgacagtttgcagcagctggcgcaaacccat
cagttaacgatggaaaccctgcttacgggcttgcagcagcaattggagctactgcgtaat
caagagttcgagctgaaaagccgtctgcgccaagctgacgaggcccgccagcgcgccggt
aatttgcgtgacgcgatcgcgcagcaacaacagcgtaccgagcagtggctacaactgagc
gatttgattggttcggctaccggcaataaattccgcactttcgcgcaggggctgacgctg
gagcagttactgctggcggcgaacgagcatctaaatgcgttagcgccgcgttatgccttg
atgcgcgtgccgggcagcaccttggcgctgcaggtagttgatcatgacatgggcgatgaa
gtgcgggcggtggagtccctctccggcggtgagacattcttgatctcgttggcactggct
ttggcgctggcatcgctgtgtgccgataccagacggcttggctcactgtttatcgatgaa
ggctttggcacgctagaccccgacagcttagagcaagcattagcctgcttagatgctctg
caagccgatggccgacaaatcggggtcatttcccatgtcagcaccttggtagagcgcatc
ggtacgcggatagcggtcgaaagcttagggggcggccgtagccgtattcgggtgctaaat
cagtaa
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integrated database retrieval system
