Plesiomonas shigelloides: SAMEA2665130_1071
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Entry
SAMEA2665130_1071 CDS
T04378
Symbol
nfo
Name
(GenBank) Endonuclease 4
KO
K01151
deoxyribonuclease IV [EC:
3.1.21.2
]
Organism
pshi
Plesiomonas shigelloides
Pathway
pshi03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pshi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SAMEA2665130_1071 (nfo)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pshi03400
]
SAMEA2665130_1071 (nfo)
Enzymes [BR:
pshi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.21 Endodeoxyribonucleases producing 5'-phosphomonoesters
3.1.21.2 deoxyribonuclease IV
SAMEA2665130_1071 (nfo)
DNA repair and recombination proteins [BR:
pshi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
SAMEA2665130_1071 (nfo)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AP_endonuc_2
Flagellin_IN
Motif
Other DBs
NCBI-ProteinID:
SBT60604
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All DBs
Position
1:complement(1216667..1217518)
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AA seq
283 aa
AA seq
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MTKYIGAHVSAAGGVDQAVWRAKELNATAFALFTKNQRQWNAAPLTDSMIAAFKQACEQT
GFRPEQILPHDSYLINLGHPESEALEKSRAAFLDEMQRCEQLGLTLLNFHPGSHLNKISD
SESLAKVAESINLALAQTHGVTAVIENTAGQGSNLGWRFEHLAEIIAQVEDKSRVGVCID
TCHTFAAGYDLSSLDACAKTFAEFDAVVGFQYLRGMHINDAKSTLGSRVDRHDSLGVGNI
GKPAFEFIMADPRFDGIPLILETVNPDIWPQEIAWLKSLANAA
NT seq
852 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaatatatcggtgcccatgtcagtgccgctggcggcgtagatcaagcggtttgg
cgcgccaaagagctcaatgccaccgcctttgccctcttcaccaaaaatcagcgccaatgg
aatgcagcgccactgactgacagcatgattgccgccttcaaacaggcctgcgagcaaacg
ggctttcgcccggagcaaatcctgccgcatgacagttacctgattaatttggggcatccg
gaaagtgaagccttggaaaaatcgcgcgcagcctttttagatgaaatgcagcgttgtgag
cagctgggtctgactttgctgaattttcatccgggaagtcatctcaacaaaatcagtgac
agtgaaagtctggccaaagtcgccgaatccatcaatttagcgctggcgcaaacccacggg
gtgaccgccgtgatcgaaaatacggccggacaaggttctaatctgggctggcgttttgaa
catctggcagaaattattgcgcaggtcgaagataaaagtcgggtcggagtttgtatcgat
acctgccacaccttcgccgcaggctatgatttaagctctctggacgcctgcgctaagacc
ttcgccgaattcgacgccgtggttggttttcagtatctgcgcggcatgcacatcaacgat
gccaagagcacgcttggtagccgcgtagaccgccatgacagcctcggcgttggcaatatc
ggtaaaccggcctttgaatttatcatggccgatccgcgttttgacggcattcccttgatt
ttggaaaccgtaaatccagatatctggccgcaagagattgcgtggttaaaatcgctggcc
aacgctgcgtaa
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