Plesiomonas shigelloides: SAMEA2665130_1165
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Entry
SAMEA2665130_1165 CDS
T04378
Symbol
rnb
Name
(GenBank) Exoribonuclease 2
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
pshi
Plesiomonas shigelloides
Brite
KEGG Orthology (KO) [BR:
pshi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pshi03016
]
SAMEA2665130_1165 (rnb)
Enzymes [BR:
pshi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
SAMEA2665130_1165 (rnb)
Transfer RNA biogenesis [BR:
pshi03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
SAMEA2665130_1165 (rnb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
S1CSD-TOTE-2
PilZ
Rho_RNA_bind
Motif
Other DBs
NCBI-ProteinID:
SBT60695
LinkDB
All DBs
Position
1:complement(1311531..1313549)
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AA seq
672 aa
AA seq
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MFQDNPLLSQLKQQMRENTPQIEGVIKGTDKGFGFIETDNQKSYFVPPPYMKKVMHGDRV
VALLRTEKEREVAEPDSLIEPFLSRFVGRIRKGRDGKLNVVPDHPLLNDPISCRPVKGLD
ATLNEGDWVVAEMKRHPLKGDRGFYADVTEFITHANDHYAPWWVTLSRHQLEREAPTATF
NGMLDENLTREDLSELPFVTIDSASTQDMDDALYIQATDNGWQLTIAIADPTAYVAEGSE
LDKEASQRAFTNYLPGFNIPMLPRELSDDLCSLREGERRPALLCRVSVHKDGSLGDDAHF
FAGWVTSHGKLVYDNVSDWLEQRENCWQPENAVVAEQITQLHQMALARTQWRSENTLVFK
DRPDYRFVLDENGVVTDIVAEHRRIANRMVEESMILANECAAKVLADKVGFGIYNAHAGF
DPELVDQAVTILSNNGVEFDRDTLLSLDGFCRLRRQLDAMPTAYLDGRIRRFQAYSEVSA
VPAPHFGLGLQAYATWTSPIRKYGDMVNHRLLKAVIRNEQPATQPSEALTTQLAERRRFN
RMSERDVGDWLYSRFLQPKLTENRSYQAEIIDVSRGGLRVRLLENGAVAFVPAPFIHPVR
DELECSTDTATISIKGEPVYRLGDTLPVTLAEVRMETRNIVARPTPAEAPAAEVKADAAE
TPSENAPATDAQ
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaagataacccgctgctttcccagcttaagcaacaaatgcgtgaaaacaccccg
caaatcgaaggtgttatcaaaggtaccgacaaaggtttcggctttatcgaaactgataat
cagaaaagttattttgtcccgcctccgtacatgaaaaaagtcatgcatggtgaccgtgtg
gtagccctgctgcgcactgaaaaagagcgtgaagttgccgagcctgacagcctgattgag
ccgttcctgagccgttttgttggccgcatccgcaaaggccgtgacggtaagctgaatgtc
gttccagatcatccactgctgaatgatccgatctcctgccgtccggtaaaagggctggat
gcaaccctgaacgaaggtgactgggttgtcgcggagatgaaacgtcacccgctcaaaggc
gaccgcggtttttatgccgatgtaaccgaattcattacccatgccaatgaccactatgcg
ccatggtgggtaacgctgtcacgccaccagctggagcgtgaagcaccaaccgccacattc
aatggcatgttggatgagaacctaacccgcgaagatctgagcgaactgccgtttgtcacc
atcgacagcgccagcacgcaggatatggacgatgcgctgtacatccaagccaccgataat
ggctggcagttgaccatcgccatcgccgatccaaccgcctacgtggccgaaggcagcgag
ctggataaagaagccagccaacgcgcgttcaccaactacctgccgggcttcaacatccca
atgctgccacgcgagctgtctgatgacctgtgctcactgcgtgaaggcgagcgtcgccct
gcactgctgtgccgcgttagcgtgcataaagacggctctctgggtgacgatgcgcacttc
tttgctggttgggtcacttcccacggcaaactggtctacgacaatgtttctgattggctg
gagcaacgtgaaaactgctggcagcctgagaacgctgtggttgccgagcaaatcacgcag
ctgcaccagatggcgctggcacgtacccaatggcgcagtgagaacaccttagtgttcaaa
gaccgccctgattaccgctttgtgctggatgaaaacggtgtggttactgacatcgtggcc
gagcatcgtcgtattgccaaccgcatggttgaagagtcgatgattctggcgaacgaatgc
gccgccaaggtactggctgataaagtcggtttcggtatctacaacgcgcatgcgggtttc
gatcctgagctggttgaccaagcagtaactatccttagcaacaacggagtcgagtttgat
cgcgacaccctgctgtcactggacggtttctgccgcctgcgtcgtcaattagatgcgatg
ccaactgcttatctggatggtcgtattcgtcgcttccaagcttacagtgaagtgagcgcc
gtaccagcaccacactttggtctgggcctgcaagcctacgcgacttggacatcaccaatt
cgtaaatacggtgacatggtcaaccatcgcctgctgaaagcggttatccgtaacgagcag
cctgcaactcagccaagcgaagcgctgactacacaactggccgagcgtcgtcgctttaac
cgtatgtccgagcgtgatgtcggtgattggttgtactcccgcttcttgcagccaaagctg
acggaaaatcgcagctatcaagccgagatcatcgatgtatcacgcggtggtttgcgcgtc
cgtctgctggaaaacggtgccgtcgctttcgttcctgcgccattcattcacccagtgcgt
gacgagctggaatgcagcaccgataccgcgactatttccatcaaaggtgagccggtttac
cgtctgggcgataccctgccagtgaccttggctgaggtgcggatggaaacccgtaacatc
gttgccagaccaacgcctgcagaagcgcctgccgctgaagtgaaagcagacgcagctgaa
acgccaagcgaaaacgcacctgcaaccgatgcgcagtaa
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