Plesiomonas shigelloides: SAMEA2665130_1495
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Entry
SAMEA2665130_1495 CDS
T04378
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
pshi
Plesiomonas shigelloides
Brite
KEGG Orthology (KO) [BR:
pshi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pshi03019
]
SAMEA2665130_1495
Enzymes [BR:
pshi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
SAMEA2665130_1495
Messenger RNA biogenesis [BR:
pshi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
SAMEA2665130_1495
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
T2SSE
nSTAND3
NACHT
ResIII
PhoH
SLFN-g3_helicase
Zeta_toxin
ABC_tran
AAA_25
Motif
Other DBs
NCBI-ProteinID:
SBT61017
LinkDB
All DBs
Position
1:1682856..1686818
Genome browser
AA seq
1320 aa
AA seq
DB search
MFPRTVAAFRMNTKSIMNGNQKVPSPFSALLPKLNGLTLRDRRRLLRRIEGAKKVKNPQA
QEAIAQELAVEIQSAQARVDARRAAVPSINYPEILPVSQKKDEIRRAIEQHQVVIVAGET
GSGKTTQLPKICLELGRGINGLIGHTQPRRLAARSVANRIAEELQVPMGGVVGYKVRFND
QVSDTTLVKLMTDGILLAEIQNDRMLSQYDTIIIDEAHERSLNIDFILGYLRELLPKRPD
LKVIITSATIDPERFSRHFNNAPIIEVSGRTYPVEVRYRPLVSEEDNDPDRDQLQAIFDA
VDELYQEGRGDILIFMNGEREIRDTADALEKRQLPHTEVLPLYARLSAAEQNRVFQPAVG
RRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCG
RVSDGICIRLYSEQDFMSRPEFTDPEILRTNLASVILQMTSLGLGDIAAFPFVEAPDKRN
IQDGVRLLEELGALNPEQNDPKKRLTAMGRKLAQLPVDPRLARMVLEAPKHGCVREVMII
TAALSIQDPRERPLEKQQASDEKHRRFQDKDSDFMTFVNLWNYLREQQKELSSNAFRRQC
KSDFLNYLRIREWQDIYTQLRQVVREQGMAINDEPADFRSVHLALLSGMLSHIGIKDLEK
NEFQGARNARFAIFPGSGLFKKQPKWTMVAELVETSRLWGRIAARIEPDWIEPLAQHLVK
RSYSEPHWEKTQNAVMASEKVTLYGIPIVADRKVNYGAIDPVMSRELFIRSALVEGEWNT
RHKFFRENRKLLAEVEELEHKSRRRDILVDDETLFAFYDQRLPHDIVSGRHFDSWWKKAE
RSQPDLLNFEKSMLIKEGSNKVSELDYPNFWHQGNFKLKLSYQFEPGQEADGVTVHIPLP
VLNQIENIGFDWQIPGLREELIVALIKSLPKPVRRNFVPAPNYAQAFLGRAEALQGNLLD
ALEREFRRMSGVTVSREEWNLSQVPDHLKITFRVVNEHGKKLSESKDLDELKYGLKEKVQ
ETLSAVADDGIEQRDLHVWSFGDLPQCYEQKRGGYAVKAYPALVDEKDSVSIRLFETEHD
QQKAMLQGTRRLLLLNVPSPIKYLHEKLPNKAKLGLYFNPFGKVLDLIDDCIDAGIDKLT
AEFGGPAWESERFEALREHVRANLNETVVEIAKQVEQILTTSHNINKRLKGKVDFTMAFA
LSDVKAQMGGLIYRGFVSDTGWQRLADLQRYLNAIERRLEKLPTDPNRDRAQMLKVESVQ
QEYQQLLAKIPKGQPIPDKVQAIRWMLEELRVSFFAQQLGTPYPVSDKRVRMAIDEALQG
NT seq
3963 nt
NT seq
+upstream
nt +downstream
nt
atgtttcctcgcacagtcgcggccttcagaatgaatacgaagagcataatgaacggaaac
cagaaagtaccatcgcctttttccgccttgctgccaaagctcaacggcttgaccctgcgg
gatcgccgacgtttgctgcgccgtattgaaggtgcgaagaaagtaaaaaatccccaggct
caagaagccatcgcgcaggagttggcggtagagattcagagcgcccaagcgcgtgttgac
gcccgtcgagcggcggtaccaagtatcaactatccagaaatcctgccggttagtcagaaa
aaagacgagatccgacgcgctatcgaacagcatcaagttgtgattgtggcgggggaaacc
ggctcgggtaaaacaacgcagttgccgaagatctgtcttgaactcggtcgcgggatcaac
ggcctgattggccatactcagccgcgtcgtctggctgcacgctctgtggccaaccggatt
gccgaagagctgcaagttccgatgggcggtgtcgtcggttataaagtgcgatttaacgat
caagttagcgataccacgctggtcaaactgatgacagacggtattttgctggccgagatt
caaaacgatcgcatgctgtcgcaatacgacactatcattatcgatgaagcgcacgaacgc
agtcttaatatcgactttatcctcggctatctgcgtgagctgctgccaaagcgtccagac
ctgaaagtcatcattacctcggcgactatcgatccggagcgtttctcgcgtcactttaat
aatgcgccgattatcgaagtttccggacgaacctatccggtggaagtgcgttatcgtccg
ctggtgagcgaagaggacaacgatccggatcgcgatcagctacaagcgattttcgatgcc
gtcgatgagctctaccaagaagggcgcggcgacatcctgattttcatgaacggcgaacgt
gaaattcgcgataccgctgatgcactggaaaaacgtcagctgccgcataccgaagtgttg
ccgctgtatgcgcgtctttctgctgccgagcaaaatcgcgtgttccaacctgcggtaggg
cgtcggattgtactggcgaccaacgtggcggaaacctctctgaccgtaccggggatcaaa
tatgtcattgacccgggtacggcgcgaatatcccgctatagctatcgcaccaaagtacag
cgactgcctattgagccgatttctcaagcctccgccaatcaacgtaaagggcgttgcgga
cgggtttccgatggtatctgtattcgtctgtactccgagcaggattttatgtcccgtccg
gagtttaccgatccagagatcctgcgaaccaacttagcctctgttattttgcagatgaca
tcgctgggtctaggcgatatcgcagcattcccatttgtcgaagcgccagataagcgcaat
atccaagacggcgtgcgtctgctggaagagctcggcgcgctcaatcctgaacaaaatgat
ccgaaaaaacgtctgaccgcgatggggcgtaaactggctcagctgccggtcgacccacgt
ttggcgcggatggtattggaagcgccgaaacacggttgtgtgcgtgaagtcatgatcatc
accgccgcgctatcgattcaagatccgcgtgagcgtccattggagaaacaacaagcctcc
gatgagaaacaccgtcgcttccaagataaagattccgatttcatgactttcgtgaatctg
tggaattatctgcgcgagcaacaaaaagaactctcgagtaatgccttccgtcgtcagtgt
aagagtgatttcctcaattacctgcgcattcgtgaatggcaagatatctatacccaattg
cgccaagtggtgcgtgagcagggtatggcgattaatgatgagcctgccgatttccgctcg
gttcatctggctttgctgtctggcatgttgtcccatatcgggattaaagatttggagaag
aacgaatttcagggcgcgcgaaatgcccgtttcgctatcttcccaggctcaggtcttttc
aagaagcaaccgaaatggaccatggtggccgagctggtggaaacctcccgtttgtgggga
cgcattgccgcgcgtattgagcctgattggatcgagccgcttgcccagcatttggtgaaa
cgcagttatagcgagccgcattgggagaaaacccagaacgccgtgatggcgagcgaaaaa
gtcacgctgtacggcattccgattgttgccgatcgcaaagtcaattacggtgcgattgat
ccggtgatgtcgcgtgagctgtttatccgctcggcgctggtggaaggggaatggaatact
cggcataagttcttccgtgaaaaccgtaagctgttagcggaagttgaagagctggagcat
aaatctcgtcgtcgcgatattttggttgatgacgaaacgctgtttgcgttctatgaccaa
cgtctgccgcatgacatcgtttccggtcgtcatttcgatagctggtggaagaaagctgag
cgatcgcaacctgatctgctgaattttgaaaagtcgatgctgatcaaagagggatcgaac
aaagtcagtgagctggattacccgaatttctggcatcaaggcaacttcaagttaaaactg
tcgtatcagtttgaaccaggccaagaagcggatggggtgacggtacatattcctctgccg
gtgcttaaccagattgaaaatattggttttgattggcaaattccggggctgcgcgaagag
ctgattgtggcattgattaaatctttgcctaagccggtgcgtcgtaactttgtgccagcg
ccgaactatgcgcaagcattcttaggccgtgctgaagccttgcaaggcaatttgctggat
gccttggagcgcgaatttcgtcgtatgtcaggcgtgacagtgtcacgtgaagagtggaat
ctgtcacaagtgcctgaccacctgaaaatcacgttccgcgtggttaacgagcacggtaag
aaactgtcggaaagcaaagatcttgatgagctcaaatatgggcttaaagagaaagtgcag
gagaccttatcggccgtggccgatgatggtatcgagcagcgcgatctgcatgtttggagt
tttggcgatttgccgcagtgctatgagcaaaaacgcggtggctacgccgttaaagcttat
cctgcgctggtggatgaaaaagattcggtcagtatccgcttgtttgaaacggagcatgat
cagcaaaaagccatgttgcagggtacgcgtcgcctattgctgctgaatgtgccgtcaccg
attaaatatctgcatgaaaaattaccgaataaagccaaattagggttgtatttcaaccca
ttcggtaaagtgttggatctgattgatgactgcattgatgccggtattgataagttaacc
gcagagtttggtggtccagcgtgggaaagcgagcgcttcgaagcactgcgcgagcatgtg
cgcgccaacttgaatgaaaccgtggttgagatcgccaagcaggtcgaacaaatcctgact
acatcgcataacataaacaagcgcttgaaagggaaggttgacttcaccatggcctttgcg
ctgtctgatgtgaaagcgcaaatgggcggtttgatttaccgtggttttgtcagtgacacc
ggctggcagcgtttagcagatctgcagcgttatctgaatgccatcgaacgccgcttggag
aagttacctaccgatccgaatcgcgatcgcgcgcagatgctgaaagtggaaagcgtgcag
caggaataccaacagctgttggcaaaaattccaaaagggcagccaattccagacaaagta
caagcaattcgctggatgttggaagagctgcgcgtgagcttctttgctcagcaactgggt
accccatatccggtttcggataaacgtgtgcgcatggccattgatgaagcactacagggc
taa
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integrated database retrieval system
