Plesiomonas shigelloides: SAMEA2665130_1840
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Entry
SAMEA2665130_1840 CDS
T04378
Symbol
holB
Name
(GenBank) DNA polymerase III subunit delta'
KO
K02341
DNA polymerase III subunit delta' [EC:
2.7.7.7
]
Organism
pshi
Plesiomonas shigelloides
Pathway
pshi03030
DNA replication
pshi03430
Mismatch repair
pshi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pshi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SAMEA2665130_1840 (holB)
03430 Mismatch repair
SAMEA2665130_1840 (holB)
03440 Homologous recombination
SAMEA2665130_1840 (holB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pshi03032
]
SAMEA2665130_1840 (holB)
03400 DNA repair and recombination proteins [BR:
pshi03400
]
SAMEA2665130_1840 (holB)
Enzymes [BR:
pshi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SAMEA2665130_1840 (holB)
DNA replication proteins [BR:
pshi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
SAMEA2665130_1840 (holB)
DNA repair and recombination proteins [BR:
pshi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
SAMEA2665130_1840 (holB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
DNApol3-delta_C
HolB_lid
Motif
Other DBs
NCBI-ProteinID:
SBT61349
LinkDB
All DBs
Position
1:complement(2028328..2029308)
Genome browser
AA seq
326 aa
AA seq
DB search
MYYPWLSADYQQIMHGYLRGQGHHALLLRTLPGLGLDALARALAVRLLCMQPVGEQPCGH
CHSCQLMAAGNHPDFYQLEPESGKSQIGVERVRQVCERLYTHAQQGGAKVIWMPDAGRLN
EASANALLKTLEEPPANTFFILGLDESASLLPTIASRCQRWRLTVPNELQALGWMQQQPQ
ASGFNHAQALQALRLSRGAPLAALDLLAGNHMQRRADVLQGLLLFLQTTDVPTFIAQLVK
ENPAENLSWIISLLLETSALALGSQTVRINQDMQPVMEQLLQRIDVVTLQHWLQVLTALR
HELLTSGSLNSELLLTTLWLRLSSDI
NT seq
981 nt
NT seq
+upstream
nt +downstream
nt
atgtattatccgtggctgagtgctgactatcagcagattatgcacggttacctgcgcggt
caggggcaccatgcactgttgctgcgcaccttacccggtctgggcttggatgcactggca
cgtgcgttagctgtgcgcttgctctgcatgcagccagtgggtgagcagccgtgtgggcat
tgtcatagctgtcagttaatggcggcgggtaatcatcctgatttttatcagcttgagccg
gaaagcggcaaaagccagataggggtcgagcgagtacggcaagtctgcgaaaggctctat
acccacgcccagcaaggcggcgctaaagtgatttggatgccggatgccggacgtttgaat
gaagcatcggccaatgcgctgctcaaaacattggaagagcctccggcgaatacgtttttt
attcttggtttggatgaatcggccagtttgctgccgaccattgcgagccgttgccaacgt
tggcgtttaacggtgccgaacgagttgcaagcccttggttggatgcagcagcaaccgcag
gcgagtggatttaatcacgcacaagcactgcaagcgttacgcttgagccgcggagcgcca
ctggcggcgctagacttgcttgccggtaatcatatgcagcgccgggctgatgtgttgcag
gggctgttgttgtttttgcaaaccactgatgtgccgacctttattgcgcagttggtgaaa
gagaatccagccgaaaatttgagctggattattagtctgttgctggaaaccagtgcatta
gcactgggaagccaaactgtgcgcattaatcaagatatgcaaccggtgatggagcaactg
ctgcaacggattgatgtggtgacgttgcagcattggctacaggtgctgactgcgctgcgc
catgaattattgacatcaggcagcttgaatagcgaattgctattaaccactttgtggctg
cgtctgagtagtgatatctga
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