Plesiomonas shigelloides: SAMEA2665130_2426
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Entry
SAMEA2665130_2426 CDS
T04378
Symbol
recB
Name
(GenBank) Exodeoxyribonuclease V beta chain
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
pshi
Plesiomonas shigelloides
Pathway
pshi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pshi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
SAMEA2665130_2426 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pshi03400
]
SAMEA2665130_2426 (recB)
Enzymes [BR:
pshi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
SAMEA2665130_2426 (recB)
DNA repair and recombination proteins [BR:
pshi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
SAMEA2665130_2426 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
AAA_11
Motif
Other DBs
NCBI-ProteinID:
SBT61897
LinkDB
All DBs
Position
1:complement(2656919..2660776)
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AA seq
1285 aa
AA seq
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MTAQPLNPLSLPLYGERLIEASAGTGKTYTIAALYLRLLLGLGGDAAFTRPLRVDEILVV
TFTEAATGELRERIRARIREGRLLLMQMVQQPALRDLLLAEKGKKDPLLAQMMDIAPADC
TEAAQTLLAAERQMDEAAIYTIHGFCQRMLTQNAFESGSLFEQTLVTDEQSLVRQVVTDF
WRRHFYPLSRDMAAVISQEWASPEALQHEVVRYLSGPAPRIHRHGEDTDLAARHQQIVAQ
LDALKQAWLANAGEIEALIASSGIAKNKYRGDWVSKWVGEITAWAMQPTPDYRYPDSLAR
FAQSRLHEATKKGECPSLALFDQVEQLCEQTLTLRDIVLAQAIVELRGAMQRHKLERGEM
SFDDLLTRLSQALQQESGPALAEAIRQRYPLAMIDEFQDTDPQQYHIFHTLYGGRSDTGL
LMIGDPKQAIYAFRGADIFTYIEARRNVSAHYTLDTNWRSSAGMVDAVNRLFSLSPDPFL
FRADIPFSPVQASPAASGLHFTLEQQVQPALTLCRLPGDRCNSGDYQQQMAAACADSIAG
WLQAGAEGRGQIVRGGKSRPVQAQDIAVLVRTGREAALVRQALSARGVASVYLSNRDSVF
GTAEATDLLRLLQACLQPGQERLLRAALASSLLGLSAAQLDALNQDEERWEKVVAEFEMY
RRCWQRQGVLPMLHLVLRERELAETLLAGTDGERRLTNVLHLGELLQEAAAELDSEHALL
RWFALQLAEPAYGSDEQQLRLESDAHLVKIVTIHKSKGLEYGLVWLPFACGFRKADGSLY
HDDSLQPVLDLTGDPLAAERAEYERLAEDIRLIYVALTRAIYHCQVGVAALTVGNGKRDS
TDVHQSAFGYLLQRGEAGDAALLDSCCRHLCEVGNGNVALAGLPEAAQFMPPVSESAPTL
AAAQFTGHIDRNWWITSYSHLSRHQEAVDWLPHFDQDAAGEQPVSAAALAAESVVSPENS
TALAVAEADMAAEWLGTLAIDSAIDSAIDSSSDNASDKESDWAGKLTSDADSNALASIDP
AQSTEPDAPEIEYSPFTFPRGARPGTFLHSLFETLEFTAPDTWSAPLALMSDAHGLDAQW
QPVLQHWLTQVLSTPLDGEALTLNQIGPQDRRVELEFYLPIDSPLHAARLDSLCRRYDPL
TRQAPQGLEFASVQGMLKGFIDLVFRWQGRFYVLDYKSNYLGDTAADYAPDALARAMLDH
RYDLQYQLYTLALHRYLKTRVPDYDYERHIGGVYYLFLRGMQGADSNGDEQHGANGVFHC
RPDVQLINELDQLFAASSDAAVAGE
NT seq
3858 nt
NT seq
+upstream
nt +downstream
nt
atgactgcgcaacctctgaatccgcttagcctgcccttatatggcgaacgcctgattgaa
gcgtccgccggtactgggaaaacctataccattgcggcgctctatttacgcttgttgctc
ggtttgggcggcgatgccgcctttacgcgtccgctacgggtcgatgaaatcttggtggtg
acctttaccgaggcggcaaccggtgagctgcgtgagcggatccgcgcgcgtattcgtgaa
ggacgtttgctattgatgcaaatggtgcagcagccagcgctgcgagacctgttgctagcg
gagaaagggaaaaaagatccgttgttggcacagatgatggatattgctcccgccgattgt
actgaagcggcgcagactttgctggcggctgagcggcagatggatgaggcggctatctac
accatccacggtttttgccaacggatgctgacgcaaaatgcctttgagtccggcagtttg
tttgagcaaaccttggtgaccgatgagcaaagcttggtgcggcaggtggtcacggacttt
tggcgacgtcatttttatccgctgtcgcgcgatatggcggcggtgatcagccaagagtgg
gcttcacctgaagcgctgcaacatgaggtagtgcgttacttaagtggaccggcaccgcgc
attcatcggcatggcgaggataccgatctggcggcgcgccatcagcagattgtcgcgcag
cttgatgcacttaagcaggcttggctggcgaatgcgggtgagattgaggcgctgattgcc
agctctggaattgccaagaacaagtatcgtggcgattgggtgagcaaatgggtgggtgaa
atcaccgcatgggcaatgcagccgactcctgattatcgctatcctgactcgctggcacgc
tttgcacagtcgcggttgcacgaggcgacgaaaaaaggcgaatgcccgtcgctggcctta
tttgaccaggttgagcagctgtgtgagcaaacacttactttgcgcgatatcgtgctggcg
caggctatcgttgagctacgcggcgcgatgcagcggcataaacttgagcgcggtgagatg
tcgtttgatgacttgctgacgcgcttgtcgcaggcgctgcagcaagaaagtggtccggcg
ctggctgaggctatccgtcagcgttatccgttggcgatgattgatgaatttcaggacacc
gatccgcagcaataccacattttccataccctgtatggcgggcgcagcgataccggttta
ttgatgattggtgacccgaagcaggctatctatgcgtttcgtggcgcggatatctttacc
tacatcgaagcgcgtcgcaatgtaagtgcccactatacgctagacaccaactggcgctcg
tcggcggggatggtcgatgcggtcaatcgtctgtttagcctctcgccagatccatttttg
ttccgcgccgatatcccgttttcgccggtacaggcatcgcctgcggccagtgggttgcat
ttcacgctcgagcagcaagtgcaaccggcgctcacgttgtgtcgtttgccgggggatcgc
tgtaacagcggagattaccaacagcagatggctgcggcgtgcgccgattccattgccggt
tggctacaagcaggtgccgaagggcgcgggcagattgtgcgcggtggtaaatcgcggcca
gtacaggcgcaagatattgccgtgctggtgcgtactggccgtgaagcggccttagtgcga
caagccctgagcgcgcgtggcgttgcttcggtgtatctgtcaaaccgcgatagcgtattt
ggtacggcagaagccaccgatttgctgcgcttactgcaagcctgtttacaaccgggacaa
gagcgtttactgcgcgcggctctggccagtagcttactggggctgagtgctgcccaatta
gatgcgctcaaccaagatgaagagcgctgggaaaaggtggtcgcggagttcgaaatgtat
cgccgctgctggcagcgccaaggcgtgttgccgatgctgcatctggtgctgcgtgagcgt
gaattggcagaaacgctgttagcgggcactgacggtgagcgtcggttgaccaacgtgctg
catttgggcgagttgctgcaagaagcggccgccgagttagatagtgagcatgcacttctg
cgctggttcgcgctacaactggctgagccggcttacggtagcgatgaacagcaactgcgt
ctggaaagcgatgcccatctggtcaaaatcgtcaccatccataaatccaaaggcttggaa
tacggtctggtatggctgccttttgcttgcggttttcgtaaagccgatggcagtttgtac
cacgatgacagcttacagccggtgctggatttaaccggtgatccgctcgcggcggagcgc
gccgaatatgagcgcttggccgaagatatccgtctgatttacgttgcgctgacccgcgcg
atttatcactgccaagtgggcgtcgcggcgctgacggtgggtaatggcaagcgcgacagc
accgatgtacaccaaagcgcgtttggctacttgctgcaacgcggcgaagccggtgacgcc
gccttgctggatagctgctgtcgtcatctgtgtgaggtgggtaacggtaatgtggcactt
gccggtttgcctgaggcggcgcaatttatgccaccggtgagcgaaagcgcgccgacctta
gccgctgcacagtttaccggtcatatcgaccgtaactggtggatcaccagctactcgcac
ttaagtcgtcaccaagaagcggtggactggctaccgcattttgatcaggatgccgccggc
gagcaacctgtcagtgcggcggcgctcgcggcagagtcggtggtgagtccagaaaatagc
actgcgttggcggttgccgaggctgatatggccgccgagtggctcggtacgctcgccatt
gatagtgccattgatagtgccattgatagctccagtgataacgctagtgataaagaaagt
gactgggcaggtaagctcacatcggatgcagattccaacgcacttgcgtctatcgatccc
gcgcagtcaaccgagccagacgcgccagaaatcgaatactcgccgtttaccttcccgcgc
ggcgctcgcccggggacgtttttgcacagcttgtttgaaaccttagaatttaccgctccg
gatacgtggtctgcgccgttggcgctgatgagcgacgcacacgggctggacgcccaatgg
cagccggtattgcagcattggttgacgcaggtgctatcgaccccgctcgatggtgaggcg
ttaaccctcaaccaaatcgggccacaagatcggcgtgtggagttggagttttacctgccg
attgactctccactgcacgctgcgcggttggatagcctgtgtcggcgctacgatccgctc
acgcgccaagcgccacagggactggagtttgccagcgtgcaaggcatgctcaaaggcttt
atcgacttggtgtttcgctggcaggggcgcttttatgtgcttgattataagtccaactat
ttgggcgatacggcggctgattacgctccggatgcgttggcgcgcgccatgctcgatcac
cgctatgacttgcaatatcagctgtacaccttggcactgcaccgctatttgaaaacacgc
gtgccggattacgactatgagcgtcatatcggtggtgtgtattacctgtttttacgtggc
atgcaaggggcggattctaacggtgatgagcaacatggcgcgaacggggtgttccattgt
cgtcccgatgtgcagctgattaacgaattggatcaactgtttgccgcgtcgagtgacgcc
gctgtcgctggcgaataa
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