Plesiomonas shigelloides: SAMEA2665130_2428
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Entry
SAMEA2665130_2428 CDS
T04378
Symbol
recC
Name
(GenBank) Exodeoxyribonuclease V gamma chain
KO
K03583
exodeoxyribonuclease V gamma subunit [EC:
3.1.11.5
]
Organism
pshi
Plesiomonas shigelloides
Pathway
pshi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pshi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
SAMEA2665130_2428 (recC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pshi03400
]
SAMEA2665130_2428 (recC)
Enzymes [BR:
pshi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
SAMEA2665130_2428 (recC)
DNA repair and recombination proteins [BR:
pshi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
SAMEA2665130_2428 (recC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_V_gamma
RecC_C
Motif
Other DBs
NCBI-ProteinID:
SBT61899
LinkDB
All DBs
Position
1:complement(2663908..2667372)
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AA seq
1154 aa
AA seq
DB search
MFTVYHSNQLDLLKSLLCQLMRLNPLDDPFEPDVVLVQSPGMAQWLRLQVAQEFGIAANM
EFPLPATFIWNMFTCVLPDIPKQSAFGKEAMTWKLMTLLPAQLDDPLFEPLRHYLQGDLH
ADENQRKLYQLAARVADLFDQYLVYRPEWIASWERGETVAELADEHPWQPVLWRELVRLT
AELGQPHWHRANLYQKFIQALEQAPTRPQGIPKRLFIFGISALPPVYLSALKALSLHCDV
HLMFTNPSRHYWGDIQDPKWVARQWRSRDGDTTRPFLPPPNIGNPLLASMGKLGRDNFYL
LAQLEPNDIEAFVEPQTDNLLHQLQRDILNLDDGTVLMPDVEHPRHPVAQNDHSIRINAC
HSPMREVEVLHDHLLHLLQADPDLTPRDILVMVADINRYSPYIQAVFSAGAKTGASEQVQ
RIPFSISDRSASQAHPILQAFLQLLQLPYSRFAAEEILALLEVPALARQFGIDEQGLVLL
RQWVEESGIRWGLDDAAVAAEGLPVTGSHTWRFGVERMLLGYAMRTDSGLFDDQLPYDEV
SGLRAALVGQLAALLETLALWRQAFSRAHTPQAWAALLSDFLSQLFVSDTETEPVLALIT
RQIERLVEQAALARFDAPLSLAVLRDALSAALDNERISQRFLAGQVNFCTLMPMRSIPFK
VVCLLGMNDGVYPRSLPPLGFDLMAGRSQRGDRSRRDDDRYLFLEAILSAQQQLYISYVG
RSAQDNTPRAPSVLVSELLDYLLQSRILAADAAAIKAACSEAQTSSASPQKLLQLYTDAE
PHLQAHLVSEQTLTPFSPRNFMAEPKDEGGAAPAANAEASSPSSFAGQWLPSASRSGTPA
PAFWAQSWQPEAGECELELDAVRQFYRHPVRAFFRQRLRVSFDAPQAGVPDNEPFGLDGL
GRYGINQQLLNILLNHESPEQFFRRLRAEGRLPYGSFGELIWENLLADMQALSARIAHER
QDTFDWEVELELGDDSASLQLRGWLQGVQDNGLLRWRPGTLNAVDALNLWLEHLVYCLVC
HQHAVEPGVSRMLGRDESQYAFAPLAASEARVHLTCLLEGYQLGLQTPLSLLPKTGWAWL
SRCYRDGAIADDAESQQKALRALRDCYLGGYQHNGEGEDPYLQRLFGGLSDDALAQITAQ
ATRYLLPVMQHLSA
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
gtgttcactgtttaccactccaatcagctggatctgctcaaatccctgttgtgtcaattg
atgcggcttaatccgctggacgatccgtttgaaccggatgtggtgttggtgcaaagcccg
gggatggcgcagtggctgcgtttgcaggtcgcgcaggagttcggtattgccgcgaacatg
gagtttccattgccggcgacctttatctggaacatgtttacctgcgtgttgccggatatc
ccgaagcaaagtgcgtttggcaaagaggccatgacgtggaagctgatgacgctgttgcct
gcgcagctagatgaccctttgtttgagccgttacgccactatctgcaaggcgatttacat
gccgatgagaaccagcgcaagctgtatcagctagcagcgcgtgtggcggacttgtttgac
caatatttggtgtatcgcccggagtggattgccagttgggagcgcggcgaaacggtcgcc
gagttggctgatgagcatccgtggcagccggtattgtggcgtgaattggtgcgtttgacg
gccgagcttggtcaaccacactggcaccgagcaaacttgtaccaaaagtttattcaagcg
ctcgagcaggcgcccactcgcccacaagggatccccaaacggctgttcattttcgggatt
tcggccttgccgccggtatacctcagcgccctcaaggcgctcagcttgcactgcgatgtg
cacctgatgtttaccaacccaagccgccattattggggcgatattcaagatccgaaatgg
gtggctcgccaatggcgctctcgcgatggggataccacgcgaccatttttgccaccaccg
aatattggcaatccgctgctcgcgtcgatgggcaagttggggcgcgataacttttatctg
ctggcgcaattagagccgaatgacattgaagcgttcgttgagccacagaccgataatctg
ctgcatcagttgcagcgcgatatcttaaatctggatgacggcacggtgttgatgccggat
gtcgagcatccacgccatccggtggcgcaaaacgatcactcgattcgcatcaatgcctgt
catagcccgatgcgcgaagtggaagtgctgcacgaccatttgctgcaccttctgcaagct
gatccggacctgacgccgcgcgatattctggtgatggtggcggatattaaccgctatagc
ccttacattcaggcagtattttcggcgggagcgaaaactggcgcaagtgagcaggtacag
cgaattccgttctccatttctgaccgcagtgccagtcaagcgcacccgattttgcaggct
tttttacagctgctgcagctgccatatagccgttttgccgctgaggaaattttggcgttg
ctggaagtgccggcgctggcacgtcaatttggcattgatgagcagggcttagtgttgctg
cgccagtgggtggaggagtccggtattcgctgggggctggatgatgcggcggtggccgct
gagggcttaccggtgaccggcagccatacttggcgctttggggtcgagcgcatgttgctg
ggttatgccatgcgcaccgacagcggtctgttcgatgatcagctaccctatgatgaggtg
tcgggtttacgtgccgcgctggtggggcaattggcggcgttactggaaaccttggcgctg
tggcgacaagccttcagccgcgcgcacacgccacaggcttgggcggcgctgctgagtgat
tttctcagtcagctgtttgtcagtgataccgaaaccgaaccggtattggcgctgatcacc
cgtcaaattgagcggctggtggagcaggctgcgctggctcgctttgatgctccgttatca
ctggcagtattgcgtgatgcgctgtcggcggcactggataatgagcggatcagtcagcgt
tttctggccggtcaggtgaacttctgtaccctgatgccaatgcgctcaattcctttcaaa
gtggtgtgtttgctgggcatgaatgatggcgtgtatccgcgcagcctgccgccactgggt
tttgacctgatggcggggcgtagtcagcgtggcgatcgttcgcggcgtgatgatgaccgc
tacctgtttttggaagcgattttgtccgcgcaacagcagctgtatatcagctatgtcggg
cgttcggcgcaggataatacgccacgagcaccgtcggtactggtcagtgaattgctcgat
tatttgctacaaagtcggattttggctgcggatgctgccgcgattaaagcggcttgttct
gaggcgcagacctccagtgcatcgccgcaaaagttgttacaactttacactgacgccgag
ccgcatttgcaggcacatttagtctcagaacagacacttacgccgttcagtccacgtaac
tttatggcggagccaaaagacgaaggtggtgcggcgccggcggcgaacgccgaggcaagc
tcgccgagcagttttgcggggcagtggctgccgtcggcatcccgttcgggaacgccggct
ccggcgttctgggcgcaaagttggcagccggaagccggtgagtgcgaactggagctcgat
gcggtgcggcaattttatcgtcatccggttcgggcgtttttccgccagcgcctgcgcgtc
agttttgacgcgccgcaagcaggggtgccggataatgagccgtttggtctggatggtcta
ggccgctatggcatcaatcagcagctgctgaatattttgctcaatcacgagtcacctgag
cagttttttcgccgcctgcgcgccgaagggcgtttgccgtacggcagctttggcgagttg
atttgggaaaatctgttagcggatatgcaggccttgtcagcgcgtattgcccatgagcga
caagacaccttcgattgggaagtagagctggagttaggcgacgatagcgcgtcgttacaa
ctgcgcggttggttgcaaggcgtgcaagataacggactactgcgctggcgtcctggcaca
ttaaatgctgtagatgcactgaacttatggttggagcatctggtctattgcctagtgtgc
catcagcacgcggtcgagccgggcgtgagccgtatgctggggcgcgatgagagtcagtat
gcctttgcgccactggcggcgtctgaggcgcgcgtgcatttgacgtgcttgctggaaggc
tatcagctggggttacagactccgttgtcactgctgccgaaaaccggctgggcatggctt
agccgctgttatcgtgatggcgcgatagccgacgatgctgagagtcagcaaaaagccctg
cgggcgctacgcgattgttatttgggcggataccaacataacggtgaaggggaagacccg
tatttgcagcgtttgttcggtggtctcagtgacgatgcgctggcgcaaattactgcgcag
gccacacgttatttattaccggttatgcagcacttgagtgcgtga
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