Plesiomonas shigelloides: SAMEA2665130_2475
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Entry
SAMEA2665130_2475 CDS
T04378
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pshi
Plesiomonas shigelloides
Pathway
pshi03030
DNA replication
pshi03430
Mismatch repair
pshi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pshi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SAMEA2665130_2475 (dnaE)
03430 Mismatch repair
SAMEA2665130_2475 (dnaE)
03440 Homologous recombination
SAMEA2665130_2475 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pshi03032
]
SAMEA2665130_2475 (dnaE)
03400 DNA repair and recombination proteins [BR:
pshi03400
]
SAMEA2665130_2475 (dnaE)
Enzymes [BR:
pshi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SAMEA2665130_2475 (dnaE)
DNA replication proteins [BR:
pshi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
SAMEA2665130_2475 (dnaE)
DNA repair and recombination proteins [BR:
pshi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
SAMEA2665130_2475 (dnaE)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
SBT61939
UniProt:
A0A379CQX9
LinkDB
All DBs
Position
1:complement(2715175..2718654)
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AA seq
1159 aa
AA seq
DB search
MGQPRFVHLRVHSDYSMIDGLAKTGPLVKKAAALAMPALAITDFTNLCGLVKFYGTAHGA
GIKPIIGADFLMHNPLLGDELVELTILAANNTGYQHLTLLISQAYQRGYVQGGPVIERDW
LEQHHEGLIVLSGARYGDVGKALLRGNQELVDECINFYQTYFPDRYYLELIRTGRQDEET
YLHFAVELAARCDLPVVATNDVRILTPEDFDAHEIRVAIHDGFTLDDPKRPKKYSAQQYL
RSEDEMCELFADIPQALENSVEIAKRCNVTIRLGEYFLPQFPTGDMSTEDFLVMKSREGL
EERLEFLFPDPAVRAEKRPPYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNGIPVGP
GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDKRDQVIEHVAD
MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQ
LQAAYDADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDSEGHHPVTQ
FDKNDVEYAGLVKFDFLGLRTLTIINWALEMINPRLAKEGKPPVDIAAISLTDPASFELL
QRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREA
ISYPDVQWQHESLQPILEPTYGIILYQEQVMQIAQTLSGYTLGGADMLRRAMGKKKPEEM
AKQRGTFKEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYPA
EFMAAVMTADMDNTDKIVGLVEECRRMGLKILPPDVNSGEHHFRVNEAGEIVYGIGAVKG
VGEGPIEAIVEARQAGGYFRDLFDFCARVDVKRINRRVLEKLILSGAMDRLGPHRAALMA
SLEEALKAADQHAKAEALGQADMFGVLADAPEQVEQAYANVPPWPDQVWLEGERETLGLY
LTGHPITQYLKELDRYVPSRLKDMVPSPRGQVTVAAGLVVAARVMTTKRGSRIGLVTLDD
RSGRLEVMLFSDALDRYQHLVEKDRILLVTGQVSFDDYSGGLRMTAREVLDIGEAREKYA
RALAISLTDGQIDDQFFSRFRQVLEPHRAGSVPVNIYYQRDDARARLRLGTEWRVTPSDQ
LLLGLRTLIGNEQIELEFD
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atggggcagccccgttttgttcacttacgggttcacagtgattactccatgattgacggg
ctggcgaaaaccggcccgttggtcaaaaaagccgccgcacttgcaatgccggcattggct
atcaccgatttcaccaacctgtgtggtctggtgaaattctacggcaccgcgcacggtgct
ggtatcaagcccattatcggggctgactttttaatgcataaccccttattgggggatgag
ctggtggagcttaccattctggcggccaataacaccggttatcagcatctgacgttactg
atttcgcaagcgtaccaacgtggttatgtgcaaggtgggccagtcatcgaacgtgattgg
ttagagcaacaccacgaaggactgattgtgctttccggcgcccgttatggcgatgtcggc
aaggcactgctgcgcggtaatcaggagttggtggatgagtgcatcaacttttaccaaacc
tattttccggatcgctactatctggagctgatccgtaccggtcgtcaagacgaagagact
tacctgcattttgcggttgaattggctgcgcgttgcgatctgccggtggtggcgaccaac
gatgtgcgtattttgacgccggaagatttcgacgcccatgaaattcgggtcgccattcac
gatggctttaccctcgacgatccaaaacgaccgaagaaatacagtgcgcagcaatatctg
cgtagcgaagacgagatgtgcgagctgtttgccgacatcccgcaagcgctggaaaacagt
gtagaaattgccaaacgttgtaacgtaaccatccgtttgggcgagtacttcctgccgcaa
ttcccgaccggcgatatgtccaccgaagattttctggtgatgaaatcccgcgaaggcttg
gaagagcgtctggaattcttgttccccgatccggctgtacgcgccgagaagcgcccccct
tacgatgagcgtctgcaaatcgagctcgacgtaattaaccaaatgggctttccgggttac
ttcctgatcgtgatggagtttatccagtggtccaaggataacggtattccggtaggccct
gggcgcggctcgggtgctggttcattggtggcctatgcgctgaaaattaccgatctggat
ccgctggaatttgacctgctgttcgaacgtttcttgaaccctgaacgggtttccatgccc
gactttgacgtcgacttttgcatggataagcgcgatcaggttatcgagcacgtggccgat
atgtatggtcgtgatgcggtatcccagatcatcactttcggtaccatggcggccaaagcg
gtgatccgtgatgtgggccgtgtgctgggccatccgtatggctttgtggatcgcatctcg
aagctgatcccgcctgatcctggcatgaccttggcgaaagcctttgaagccgagccacag
ctgcaggcggcgtatgacgccgatgaagaggtgcgggcgctgatcgatatggcgcgtaaa
ctggaaggggtcacccgtaacgccggtaaacacgccggtggggtggtgattgcgccaacc
aagatcaccgactttgccccgctgtattgcgactccgaaggtcatcatccggtaacccag
ttcgataaaaacgatgtggaatacgccggtctggtgaagtttgacttcctcggcctgcgt
accttgaccatcatcaactgggcgttggagatgattaacccgcgcttggccaaagagggc
aagcctccggtagatattgcggcgatttcgctgaccgatccggcctcgtttgagttgctg
caacgctctgaaacgaccgcggtattccagctcgaatcgcgtggtatgaaagatttgatc
aaacgtctgaagcccgactgcttcgaagatatgatcgcgctggtggcgctattccgtccg
ggcccactgcaatccgggatggtggataactttatcgaccgtaagcacgggcgtgaagcg
atctcgtatccggacgtgcaatggcaacatgagtcactgcaacccattctggagccgacc
tacggcatcatcttgtatcaagaacaggtgatgcagattgcccagacgttatccggctat
acgctcggcggtgcggatatgctgcgccgtgcgatgggtaagaaaaagccagaagagatg
gccaagcagcgcggcacctttaaagagggcgcggagaagaacggcgtcgacggtgagttg
gcgatgaaaatcttcgacttggtggagaagtttgctggctacggctttaacaaatcgcac
tccgcggcctatgcgctggtgtcttaccaaacgctgtggctcaagactcactatccggcg
gaattcatggcggcggtaatgaccgccgatatggataacaccgataaaatcgttggtctg
gtcgaagaatgccgtcgcatggggctgaaaattctgcctccagatgtgaatagcggtgag
catcacttccgtgtcaacgaagcgggcgagattgtgtacggcatcggggcggtgaaaggg
gtcggtgaaggcccgatcgaagcgattgtcgaggcgcgtcaagccggtggttatttccgt
gacctgtttgatttttgtgcccgcgtggatgttaaacgcatcaaccgccgagtactggaa
aagctgattttatccggcgcgatggatcgcttaggcccgcaccgcgcggcgctgatggcg
agtttggaagaagcactgaaagcggccgatcagcatgccaaagccgaagcgttggggcag
gctgacatgttcggcgtgctggccgatgcgccggagcaagttgaacaggcatatgccaac
gtgccgccgtggccagatcaagtgtggctggaaggggagcgcgagacgctcggcttgtat
ctgaccggacacccgatcacccagtatctgaaagaattagaccgctatgtgccgtcgcgc
ttaaaagatatggtgccatcgccacgcggtcaggttaccgtagcggctggcttggtagtg
gctgcgcgggtgatgacaacgaaacgtggctcgcggatcggtctggtgacactggatgat
cgttccggccgactggaagtaatgttattctcggatgcactcgatcgttatcagcatctg
gtggaaaaagaccgcattttgctggttaccggacaggtcagctttgatgactactccggc
ggacttagaatgacggctagagaagtgcttgatattggtgaggcgcgggaaaaatacgcc
cgtgcacttgccatctcgttaacagacgggcaaattgatgaccagtttttcagccgtttc
cgacaggtgctcgagccgcaccgcgccgggagtgtgccggtcaatatttactaccagcgg
gatgacgcgcgcgcccggctgcgtttaggtactgaatggcgtgtaaccccatccgatcaa
ttgctactcggtctgcgtacgctgatcgggaatgaacagatcgagctggagtttgactag
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integrated database retrieval system
