Plesiomonas shigelloides: SAMEA2665130_2557
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Entry
SAMEA2665130_2557 CDS
T04378
Symbol
deaD
Name
(GenBank) Cold-shock DEAD box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pshi
Plesiomonas shigelloides
Pathway
pshi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pshi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SAMEA2665130_2557 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pshi03019
]
SAMEA2665130_2557 (deaD)
03009 Ribosome biogenesis [BR:
pshi03009
]
SAMEA2665130_2557 (deaD)
Enzymes [BR:
pshi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SAMEA2665130_2557 (deaD)
Messenger RNA biogenesis [BR:
pshi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SAMEA2665130_2557 (deaD)
Ribosome biogenesis [BR:
pshi03009
]
Prokaryotic type
rRNA helicases
SAMEA2665130_2557 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_30
Motif
Other DBs
NCBI-ProteinID:
SBT62011
LinkDB
All DBs
Position
1:complement(2799192..2801120)
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AA seq
642 aa
AA seq
DB search
MAELETTFAELGLPTPILTAIESMGYEKPSPIQAACIPHLLEGRDVLGMAQTGSGKTAAF
ALPMLTRIQPEVARPQVLVLAPTRELAVQVSEAFGDFSKHMSGLRVLALYGGQRYDIQLR
ALRQGPQVVVGTPGRLLDHIKRGTLDLSGLKGLVLDEADEMLRMGFIEDVETIMAELPED
HQTALFSATMPDPIRRITRRFMRDPQEVKIQAAVRTTPNIAQNYWTVYGMSKNDALVRFL
EAEDFDAAIIFVRTRTATLDVAEVLERNGYSCAALNGDMTQPLREQTLERLRNGRLDILI
ATDVAARGLDVERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNV
ERTMNVSIPEVDLPTNALLAQRRIEQFKSKIALQLENHDLAAYRELLNGLMGEEQDPADL
AAALLMMAQGDRKLILPADPVIERRPRREFRDRDERGGRDRRDSRDGRRDDRPRRDGDRP
ERRERRDVGPMDVYRLEVGRDDGVEVRHIVGAIANEGDLSSRYIGNIKLFDSHSTVELPR
GMPSDMLDHFTRTRILNKPIRMQLVGEASPRPERREGGDRPRREGGDRPRREGGDRPRRE
GSDRPRREGGDRPRGSFGNGERRSGERSHSGERRERRERSQD
NT seq
1929 nt
NT seq
+upstream
nt +downstream
nt
atggctgaattagagactacttttgctgaactgggtttgccgaccccgatcctcaccgcc
atcgagagcatgggctatgaaaaaccgtcgccaattcaggctgcgtgtatccctcacctg
ctggaaggccgtgatgttctgggcatggcacaaaccggtagcggcaaaacagcggccttt
gcgttgccgatgttaacccgtattcagcctgaagtagcccgtcctcaggtactggttctg
gctcctactcgtgagctggccgtgcaggtatccgaggcattcggtgatttttccaagcac
atgagcggtctgcgtgttctggccctgtacggtggccagcgttatgacatccagctgcgt
gctctgcgtcagggcccacaggttgtggtaggtacaccaggtcgtctgctggatcacatc
aagcgtggtacgctggatctgtccggtctgaaaggtctggttctggacgaagcagacgaa
atgctgcgcatgggcttcatcgaagacgttgaaaccattatggctgaactgccggaagat
catcagaccgcgctgttctccgcgactatgccggatccaatccgtcgtattacccgccgc
ttcatgcgtgatccgcaagaagtgaagattcaggctgccgtgcgcaccacgccaaacatt
gcccagaactactggaccgtgtatggcatgagcaaaaatgatgcactggtacgtttcctg
gaagcggaagattttgatgctgctatcatcttcgtgcgtactcgtactgcaacgctggat
gtggcagaagtgctggagcgtaacggctacagctgtgctgcgctgaacggcgacatgact
cagccactgcgtgagcaaactctggagcgcctgcgtaacggtcgtctggatatcctgatt
gcgactgacgttgcggcgcgtggtctggacgttgagcgtatcagcctggttgtaaactac
gacatcccattggatgccgagtcttacgtacaccgtatcggtcgtactggtcgtgcgggc
cgtagcggtcgtgcgctgctgttcgtcgagccgcgtgagcgtcgtctgctgcgtaacgtt
gagcgcaccatgaacgtgagcattccagaagtggatctgccgactaacgcgctgctggca
caacgccgcatcgagcagttcaagtctaagattgcgctgcaactggaaaaccacgatctg
gccgcttaccgtgagctgctgaatggtctgatgggcgaagagcaagatccagcggatctg
gctgctgcgctgctgatgatggcgcaaggcgatcgtaaactgatcctgcctgcagatccg
gtgattgagcgtcgtccacgtcgtgaattccgtgaccgtgatgagcgcggtggtcgtgac
cgtcgtgacagccgtgatggtcgtcgtgatgatcgtccacgtcgtgatggcgatcgtcca
gagcgtcgtgagcgtcgtgatgtgggcccaatggacgtttaccgtctggaagtgggtcgt
gatgatggcgtggaagttcgtcatatcgtgggcgcgattgccaacgaaggcgatctgagc
agccgttacatcggtaacatcaagctgtttgacagccactctactgtggaactgccacgt
ggtatgccgtctgacatgctggatcactttacccgtacccgcattctgaacaaaccaatc
cgtatgcaactggtgggtgaagcgtctccacgtccagagcgtcgtgaaggtggtgatcgt
ccacgtcgcgaaggcggtgatcgtccgcgtcgtgaaggtggtgatcgtccacgccgtgaa
ggcagtgatcgtccacgtcgtgaaggcggtgaccgtccacgcggtagcttcggcaacggt
gagcgtcgtagcggtgagcgtagccacagcggcgagcgtcgtgagcgtcgcgagcgcagc
caagactaa
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