Plesiomonas shigelloides: SAMEA2665130_2561
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Entry
SAMEA2665130_2561 CDS
T04378
Symbol
truB
Name
(GenBank) tRNA pseudouridine synthase B
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
pshi
Plesiomonas shigelloides
Brite
KEGG Orthology (KO) [BR:
pshi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pshi03016
]
SAMEA2665130_2561 (truB)
Enzymes [BR:
pshi01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
SAMEA2665130_2561 (truB)
Transfer RNA biogenesis [BR:
pshi03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
SAMEA2665130_2561 (truB)
Prokaryotic type
SAMEA2665130_2561 (truB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
TruB-C_2
Motif
Other DBs
NCBI-ProteinID:
SBT62014
LinkDB
All DBs
Position
1:complement(2805250..2806185)
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AA seq
311 aa
AA seq
DB search
MSRPRRRGRDVHGILLLDKPQGITSNDALQKVKRLYNANKAGHTGALDPLATGMLPICLG
EATKFSQYLLDSDKRYRVIAKLGQRTDTSDSDGEVIQERPVQVTAEQLDEALTHFRGDLQ
QIPSMYSALKYEGKPLYEYARQGIEVPRESRPITVYELTLIRFEGDEVELEVHCSKGTYI
RTIVDDLGERLGCGAHVIYLRRLAVATYPMERMVTLEQVEALLEKARAEDISPSIELDPL
LLPADTAVQHLPQVNMPSVVAGYAKLGQAVQVSGAPASGLVRMTEGDEQVFFGLGEIDDQ
GRVAPRRMMVL
NT seq
936 nt
NT seq
+upstream
nt +downstream
nt
atgtctcgtccacgccgccgcggtcgtgatgtacacggcattttgttgctggataaacct
caaggcatcacctcgaacgatgcgctgcagaaagtaaaacgtctgtacaacgccaacaag
gccggtcataccggagcgctggatccgttggcgaccggcatgctgccgatttgcctaggt
gaggcgaccaagttttcccagtatctgctggattctgacaagcgctatcgcgtgattgcg
aaactcggtcagcgtaccgacacctccgactcggatggtgaagtgatccaagagcgtccg
gtgcaggtcaccgcagagcaactggatgaagccttgacccattttcgtggcgatctgcag
cagatcccgtccatgtattcggcgctgaaatacgaaggcaagccgctgtacgaatatgct
cgtcaaggcattgaagtgccgcgcgagtcgcgtccgattaccgtgtacgagctgacgctg
atccgctttgaaggtgatgaagttgagctggaagttcactgctcaaaaggcacctacatt
cgcactatcgtcgatgatctgggcgagcgtttaggctgtggtgcgcatgtgatttacctg
cgccgtctggctgttgccacctatccgatggagcgtatggtgacattggagcaggtggaa
gccttactggaaaaagcgcgcgcggaagacatttcaccgagcatcgagttagacccactg
ctgttaccggccgacaccgcggtgcaacatctgccacaagtgaacatgccgtcagtggtt
gccggttatgccaagctggggcaggcggtacaagtcagtggcgcgccagcgtctggtctg
gttcgcatgaccgaaggtgatgagcaggtcttttttggcctcggcgaaatcgatgatcag
ggccgcgtggctccgcgtcggatgatggtgctgtaa
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integrated database retrieval system
