Plesiomonas shigelloides: SAMEA2665130_2664
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Entry
SAMEA2665130_2664 CDS
T04378
Symbol
rapA
Name
(GenBank) RNA polymerase-associated protein rapA
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
pshi
Plesiomonas shigelloides
Brite
KEGG Orthology (KO) [BR:
pshi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pshi03021
]
SAMEA2665130_2664 (rapA)
Transcription machinery [BR:
pshi03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
SAMEA2665130_2664 (rapA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RapA_C
Tudor_RapA
Tudor_1_RapA
SNF2-rel_dom
Helicase_C
ResIII
DEAD
Cas3-like_C_2
AAA_34
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
SBT62111
LinkDB
All DBs
Position
1:complement(2924614..2927526)
Genome browser
AA seq
970 aa
AA seq
DB search
MPFALGQRWISDTESELGLGTVVAIEARTITILFPVSGENRVYSRVDAPVTRVMFNQGDT
ITSHEGWQMRVDEVLEAHGVLTYVGTRLDTEEEGISLREVMLDNKLTFSKPQDRLFAGQI
DRMDRFALRYRALNHQREQFRSPLRGLRGARASLIPHQLYIAHEVGCRYAPRVLLADEVG
LGKTIEAGMIIHQQLLSGRAQRVLVIVPETLQHQWLVEMLRRFNLRFALFDEERCAEAGL
DAENPFETEQLVICSLDFIRKKRQRCEQAAEAEWDLLVVDEAHHLVWSEDKPSREYQVVE
TLTENIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEEFVAEQQQYQPVADAVADIT
AGKPLSVEAQNLLTELLSEQDVEPLLKVINAADVDETERLLARQTLINNLMDRHGTGRVL
FRNTRQGVKGFPQRSLNQITLPLPSQYQTAIRVARLMGASKVDDRAQQMLYPEQIYQAFE
GENATWWNFDPRVEWLLTFLKNNRDAKVLVICAKAQTAVHLEQALREREAIRAAVFHEGL
SIIERDKASAYFAQVEEGAQVLLCSEIGSEGRNFQFASNLVMFDLPMNPDLLEQRIGRLD
RIGQRQDIQIHVPCLEGTSQALLSRWFHEGLDAFEHTCPTGRPVYDAFVERLIPYLAEPD
NQEGFDELLADSRAMHDKLKAQLESGRDRLLEMHSNGGEEAQTLASEIAEQDGDTKLVSF
ALNLFDIIGVHQEDRGENTLVLEPTGHMLVPDFPGLPSDGCTVTFDREVALSREDAQFLT
WEHPILRNGIDLILSGDTGMTAMSLLKNKALPAGTLLLELVYVVEAQAPKHLQLTRFLPP
TPVRLLMDVSGNDLSKSIGFEALNRQLSPVNRHTGSKLVNAVQKEIHAMLTMAEPKANEL
ARVEIDAARKLADDVMTAELDRMLALKAVNPNIREDEISMLELGRKHVLQHLDEANWRLD
SLRVVVVTHQ
NT seq
2913 nt
NT seq
+upstream
nt +downstream
nt
atgccttttgcacttggtcaacgttggatcagtgatactgagagtgagttaggtctaggt
acggttgtcgctattgaagcccgtaccatcaccattctgttccctgtttccggtgaaaac
cgtgtttattcacgagtggacgccccggtgactcgcgtcatgttcaaccaaggcgatacc
atcaccagccacgaaggttggcagatgcgtgtcgatgaagtgctggaagcacacggtgtc
ctgacttatgtcggtacccgtctggatactgaggaagagggcatcagcctgcgcgaagtg
atgctggataacaagctgaccttcagcaaacctcaggatcgcctgtttgccggtcaaatc
gaccgtatggatcgttttgccctgcgttatcgcgcgctgaaccatcagcgtgaacaattc
cgctcgccgctacgcggtctgcgtggcgctcgtgccagcctgatcccgcaccagctgtac
atcgcccatgaagtgggttgccgttatgcgccgcgcgtattgctggccgatgaagtgggt
ttgggtaagaccattgaagcgggcatgatcattcatcagcaactgctgtctggccgtgct
cagcgcgtgctggtgatcgtgccagaaaccttgcaacaccagtggctggtggagatgctg
cgtcgctttaacctgcgctttgcgctgtttgacgaagagcgctgcgccgaagccggtttg
gatgcggagaacccgttcgagaccgaacagctggtgatctgctccttggatttcattcgt
aaaaagcgccagcgctgtgaacaggcggcggaagcggaatgggatctgttggtggtcgac
gaagcccaccatctggtgtggagcgaagataaaccaagccgcgaatatcaagtggtggaa
actctgactgaaaatatcccgggcgtgctgctgctgaccgccaccccggagcagttgggt
caagaaagccactttgcgcgcttgcgtttgctggatcctgatcgtttccacgattacgaa
gagttcgtggccgagcaacagcaataccagccggtggccgatgcggttgccgatattacc
gccggtaagccgctgagcgtggaagcgcaaaatctgctgactgaactgctcagtgagcag
gatgtggagccgctgctgaaagtgatcaacgcggccgacgtggatgaaaccgagcgcctg
ctggcgcggcaaactctgatcaataacctgatggatcgccacggcactggccgcgtgctg
ttccgtaacacccgtcagggcgtgaaaggcttcccgcagcgcagcttaaaccagatcacg
ttaccgctgccaagccagtatcaaaccgcgatccgtgtggcacgcctgatgggcgcgtcg
aaggtggatgatcgcgcccagcagatgctgtacccagagcaaatctaccaagcgtttgaa
ggcgaaaatgccacttggtggaactttgacccgcgcgtggagtggttgctgaccttcttg
aagaacaaccgcgatgccaaagtgctggtgatctgtgccaaggcgcaaacggccgtgcat
ctggaacaagcgctgcgtgagcgtgaagcgattcgtgcggcagtcttccacgaaggcttg
tctatcatcgagcgcgacaaggcttcggcttattttgcgcaggtggaagagggcgcgcag
gtactgctgtgctcggaaattggctccgaaggccgtaacttccagttcgccagcaatctg
gtgatgttcgatttgccaatgaacccagatctgctggagcagcgtattggccgtctggat
cgtatcggccagcgtcaggatatccagatccatgtgccgtgcttggaaggcacctcgcag
gctctgctgtcgcgctggttccacgaaggcttggatgcgttcgagcatacctgcccgacc
ggtcgtccggtttacgatgcgtttgtcgagcgcctgatcccatatttggcggagccggat
aatcaagaaggctttgatgaactgctggccgatagccgcgcgatgcacgataaactcaaa
gcgcagctggaaagcggccgcgatcgcctgctggagatgcactccaacggtggcgaggaa
gcgcagacattggccagcgaaattgccgagcaagatggcgataccaagctggtgagcttt
gccctgaacctgttcgatatcatcggtgtgcatcaagaagatcgcggcgagaataccttg
gtgctggagccaactggccacatgctggtgccggacttcccaggtctgccatccgatggc
tgtacggtgaccttcgatcgtgaagtggcgttgtcgcgtgaagatgcgcagttcctgacg
tgggaacacccgattttgcgtaacggtattgacctgatcctgtccggtgataccggtatg
accgcgatgtcgctgctgaaaaataaagccttgccagccggtacactgctgctggagctg
gtgtatgtggtggaagcgcaggcgccgaagcacctgcaactgacgcgtttcctgccgcca
acgccggtgcgtttgctgatggatgtcagtggtaacgatctctcaaaatcgattggtttt
gaagcgttgaatcgccaactgagcccagtgaaccgtcataccggcagcaagctggtgaac
gcggtgcaaaaagagatccacgcgatgttgaccatggccgagccgaaggctaatgagctg
gcgcgggtggaaattgatgccgcgcgtaagctggcggacgacgtgatgaccgccgagctg
gatcggatgttggccctgaaagcggtcaacccgaacatccgtgaggatgaaatcagcatg
ctggaactgggtcgtaagcatgttctgcagcatctggacgaagccaactggcgtctggat
tccctgcgcgtggtcgtggtgacgcatcagtaa
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