Plesiomonas shigelloides: SAMEA2665130_2963
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Entry
SAMEA2665130_2963 CDS
T04378
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
pshi
Plesiomonas shigelloides
Pathway
pshi03420
Nucleotide excision repair
pshi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pshi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SAMEA2665130_2963 (uvrD)
03430 Mismatch repair
SAMEA2665130_2963 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pshi03400
]
SAMEA2665130_2963 (uvrD)
Enzymes [BR:
pshi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SAMEA2665130_2963 (uvrD)
DNA repair and recombination proteins [BR:
pshi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SAMEA2665130_2963 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
SAMEA2665130_2963 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
PhoH
AAA_22
Motif
Other DBs
NCBI-ProteinID:
SBT62385
LinkDB
All DBs
Position
1:complement(3258878..3261049)
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AA seq
723 aa
AA seq
DB search
MDVSLLLDGLNDKQRAVVAAPRSNLLVLAGAGSGKTRVLVHRIAWLMAVEHSSPYSILAV
TFTNKAAAEMRHRIEQLVGTAQNGMWIGTFHGIAHRLLRAHHLDAGLPQDFQILDSDDQL
RLLKRLIKAMNLDEKHWPPRQAAWYINGKKDEGLRPAHIETYGNPTEAVWLKIYQAYQET
CDRAGLVDFAELLLRAHELWLHKPAILQHYRSRFANILVDEFQDTNRIQYAWIRMLAGDE
SKVMIVGDDDQSIYGWRGARVENIQQFLHDFAGAETIRLEQNYRSTGNILAAANALIANN
SERMGKKLWTDGQGGEPISLYCAFNELDEARFVVGRIKAWQDKGGALGDCAILYRSNAQS
RVLEEALLQASMPYRIYGGMRFFERQEIKDALAYLRLIANRNDDAAFERVINTPARGIGD
RTLDLVRQAARDQQQTLWQAAEYLLRENVLAGRAAGALLRFTELIRALESETWEMDLHRQ
TDHVIRHSGLWQMYEQEKGEKGQARIENLEELVTATRQFEVPEEADEMTPLQAFLTHAAL
EAGEGQADAYDDAVQLMTLHSAKGLEFLQVFIVGMEEGMFPSQMSAEESGRLEEERRLAY
VGVTRAMQKLTLTYAESRRVYGKEQYHRPSRFLKELPDECVEEVRLRATVSRPVTQTRFN
SAPAAMRSNDSGFSLGQRVQHAKFGEGTIINTEGSGEHARVQVAFNGAGIKWLVVAFANL
SPL
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atggatgtgtcccttctgcttgacggcctgaacgacaaacagcgcgccgtggttgccgcg
ccgcgcagcaatttgctggtactggccggtgccggcagtggtaaaacccgcgttctggta
caccggatcgcttggttgatggcggtagagcacagctcgccgtactccattttggccgtg
acctttaccaacaaggccgccgccgagatgcgccaccggattgaacagctggtcggcacc
gcgcaaaacggcatgtggattggcaccttccacggcatcgcgcaccgtctgctgcgcgca
caccatctggatgccggcttaccgcaagacttccaaattctcgactcggacgatcagctg
cgcttgctgaagcgtctgatcaaagccatgaatctggatgaaaagcattggccgccgcgt
caggctgcgtggtacatcaacggcaagaaagacgaggggctacgccctgcgcacattgaa
acctacggcaacccaaccgaagcggtatggctgaaaatctatcaggcttatcaggaaacc
tgtgatcgcgccggactggtcgactttgccgaattgctgctgcgcgcccacgaattgtgg
ctgcacaaaccggcgattttgcagcattatcgcagccgttttgccaatattttggtggac
gagttccaagataccaaccgcattcaatatgcgtggatccgcatgctggccggcgatgag
agcaaggtaatgatcgtgggcgatgatgaccagtcgatctatggctggcgcggggcgcgg
gtcgagaatatccagcagtttctgcatgattttgccggcgccgagacgatccgtttggag
cagaactatcgctccaccggcaacattctggccgccgccaacgccttgattgccaataac
agcgagcggatgggcaaaaagctgtggaccgatggtcaaggcggcgagccgatttccctg
tactgtgcgtttaatgagttagatgaagcgcggtttgtggtcgggcggattaaagcttgg
caagacaaaggcggcgcgctcggtgattgtgccattttgtaccgcagcaacgcccaatcg
cgggtgctggaagaggcgttattgcaagccagtatgccgtatcgtatttatggcgggatg
cgcttttttgaacgccaagagatcaaagatgcgctggcctatctgcgcttgattgccaac
cgcaatgatgatgcggcgtttgagcgggtgatcaataccccagctcgtggcattggcgat
cgcacgctggatttagtgcgtcaagcggcgcgcgatcagcagcagaccctgtggcaggcg
gcggaatacctgctgcgcgaaaatgtgttggccggtcgcgcggctggcgcattgctgcgc
tttaccgagctgatccgcgcgctggaaagcgaaacgtgggagatggacttgcatcgccag
acggatcatgtgatccggcactctgggctgtggcagatgtacgagcaggaaaaaggcgaa
aaaggtcaggcgcgcatcgaaaacttggaagaattggtgactgccacccgtcagttcgaa
gtgccagaagaggccgacgaaatgacgccgctgcaggccttcttgacccatgcggcgctg
gaagccggcgaagggcaagccgatgcctacgacgatgcggtgcagttgatgactctgcac
tcggccaaaggcttggagttcttgcaggtctttattgttggtatggaagagggcatgttc
ccgagccaaatgtccgccgaagagagcggacgactggaagaggagcgccgtctggcctat
gtgggcgtgacccgtgccatgcaaaagctgaccttaacctatgccgagtcgcggcgggtg
tacggcaaagagcaatatcatcgtccatcgcgctttctcaaagagctgccggatgagtgt
gtcgaagaggtgcgcttgcgcgccacggtgtcgcgtccggttacgcagacgcgctttaac
agcgcgccggcggcgatgcgcagcaatgacagcggcttttccctcggtcagcgggtgcag
catgccaagttcggtgaaggtaccatcatcaataccgaaggcagcggtgagcatgcgcgg
gtgcaagtggcctttaatggcgcgggcatcaagtggctggtggtggcgttcgccaatttg
agtccgctctaa
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