Plesiomonas shigelloides: SAMEA2665130_3016
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Entry
SAMEA2665130_3016 CDS
T04378
Symbol
rho
Name
(GenBank) Transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
pshi
Plesiomonas shigelloides
Pathway
pshi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pshi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SAMEA2665130_3016 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pshi03021
]
SAMEA2665130_3016 (rho)
03019 Messenger RNA biogenesis [BR:
pshi03019
]
SAMEA2665130_3016 (rho)
Transcription machinery [BR:
pshi03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
SAMEA2665130_3016 (rho)
Messenger RNA biogenesis [BR:
pshi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SAMEA2665130_3016 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_22
OB_RNB
AAA
S1CSD-TOTE-2
AAA_25
Spore_III_AA
Motif
Other DBs
NCBI-ProteinID:
SBT62426
LinkDB
All DBs
Position
1:complement(3322728..3324053)
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AA seq
441 aa
AA seq
DB search
MLCIASIIVIDLPRVHYQEPIVMNLTELKNTPVSELVALGESMGLENMARMRKQDIIFAI
LKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTIA
GKIRPPKEGERYFALLKVNEVNYDKPENSRNKILFENLTPLHANRRLRMERGNGSTEDLT
ARVLDLASPIGCGQRALIVAPPKAGKTMLLQNIAQSISANHPDCVLMVLLIDERPEEVTE
MQRLVNGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVV
PASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGT
GNMELHLARKIAEKRVFPAIDYNRSGTRREELLTSSEELQKMWILRKILHPMGEIDAMEF
LINKLAMTKTNDEFFDMMKRS
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atgctttgtatcgccagtatcatcgtaattgacttaccccgagttcactatcaagaaccc
atcgttatgaatcttaccgaactgaaaaatacacctgtctccgagcttgtggcgcttggg
gagtcaatgggcctcgaaaatatggcccggatgcgcaaacaagacattatctttgccatc
ctgaaacaacatgccaagagcggtgaagatatttttggtgatggcgtgttagagattttg
caggatggtttcggtttcctgcgatccgcagacagctcctaccttgccggtcctgatgat
atctacgtttccccgagtcaaatccgccgtttcaatcttcgtacaggtgacaccattgct
ggtaaaatccgcccgccaaaagaaggcgaacgctattttgccctgctgaaagtcaacgaa
gttaactacgacaagccggaaaactcccgcaacaagatcctgttcgaaaacttaacccca
ctgcatgctaatcgccgtttgcgcatggagcgtggtaatggctctaccgaagacttaact
gcccgcgttctggatttggcgtcgccaatcggttgtggtcagcgagccctgattgtggca
ccaccgaaagccggtaagaccatgctgctgcaaaacattgcccagagcatttccgctaac
catccagactgcgtactgatggtgctgctgattgacgagcgtccagaagaagtaactgaa
atgcaacgtctggtgaacggtgaagtggtagcgtccacctttgatgagcctgcctcccgt
cacgtgcaagtggcggagatggtgattgaaaaggctaagcgtctggttgagcacaaaaaa
gatgtggtgatcctgctcgattccatcacccgtctggcccgtgcctataacaccgtagta
ccggcgtccggtaaagtcctgaccggtggtgtggatgcgaatgccctgcatcgtccgaag
cgtttcttcggtgcggcacgtaacgtggaagagggcggtagcctgaccattattgccacc
gcgctggttgataccggctcgaagatggacgaagtgatctacgaagagttcaaaggcacc
ggtaacatggaactgcacttggcgcgtaagattgccgagaagcgtgtgttcccagccatt
gattacaaccgctccggtacccgccgtgaagagctgctgacctcgtcagaagagctgcaa
aagatgtggatcctgcgcaaaatcttacacccaatgggtgagattgatgcgatggagttc
ctgatcaacaagctggcgatgaccaagaccaacgatgaattcttcgacatgatgaagcgt
tcataa
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