Plesiomonas shigelloides: SAMEA2665130_3018
Help
Entry
SAMEA2665130_3018 CDS
T04378
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase rhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
pshi
Plesiomonas shigelloides
Pathway
pshi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pshi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SAMEA2665130_3018 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pshi03019
]
SAMEA2665130_3018 (rhlB)
Enzymes [BR:
pshi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SAMEA2665130_3018 (rhlB)
Messenger RNA biogenesis [BR:
pshi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SAMEA2665130_3018 (rhlB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
AAA_22
CCDC138_C
Motif
Other DBs
NCBI-ProteinID:
SBT62428
UniProt:
A0A1A9B243
LinkDB
All DBs
Position
1:3324637..3325923
Genome browser
AA seq
428 aa
AA seq
DB search
MSKTHLTEQKFADFGLHPDVLRALAQQGFQYCTPIQALALPYSLAGRDIAGQAQTGTGKT
LAFLASTFHHLLTHPAAADRQINQPRALIMAPTRELAIQIHADAETLAQSTGLRLGLAYG
GDGYDKQLKTLEAGVDILIGTTGRIIDYQKQNIINMGAIQVMVLDEADRMFDLGFIKDIR
YLLRRMPKPDQRLNMLFSATLSYRVRELAFEHMHNAEYVEVEPEQKTGHRIKEELFYPSN
EDKMRLLQTLLEEEWPDRCIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRMRILD
DFTQGNLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGNSISFA
CEEYALNLPAIETYIEHSIPVSKYDPDALLQELPAPFRLHRQHRPNNGRGGNTQRRPGNR
GPRKRHPA
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaaacacacttaactgaacagaaattcgccgatttcgggttgcatccggatgtc
ctgcgtgccttggctcagcaagggttccaatactgcacaccaatccaggcgctcgcactg
ccttattctttggcagggcgtgacatcgccggtcaagctcagacgggtacaggaaaaacc
ctggcttttctggcatcgaccttccaccacttactgacccacccagctgccgctgatcgt
cagattaaccaaccacgggcgctgatcatggcaccaacccgtgagctggcgatccagatc
cacgccgatgctgagaccttggcgcagtccaccggtttacgccttggtttggcgtatggc
ggcgacggctacgacaagcagctcaaaacgctggaagctggggttgatatcctgatcggt
accaccggccggattatcgattaccagaaacagaatattatcaacatgggtgccattcag
gtgatggttctggatgaagccgatcggatgttcgatctcggttttattaaggatatccgt
tatctgctgcgccgcatgccaaaaccggatcagcgtctcaatatgctgttctccgccacc
ttgtcataccgcgtacgtgagctggctttcgagcacatgcacaatgccgagtatgtggaa
gtggagccggagcaaaaaaccggccatcggatcaaagaagagctgttctatccgtcgaac
gaagacaaaatgcgcctgctgcagactctactggaagaagagtggccggatcggtgcatt
attttcgccaacaccaagcatcgctgtgaagatatctggggccatctggctgccgatggt
caccgcgtcggtctgctgaccggtgatgtggcacagaaaaagcgcatgcgcattctggat
gacttcacccaaggcaatctggacattctggtggcaaccgatgtggcggcccgtggcctg
cacattccagccgtgacccatgtgttcaactatgacctgccggacgactgcgaagattac
gtgcaccgtattggccgtaccggccgcgccggtgccagcggtaactctatcagcttcgcc
tgtgaagagtacgcgctgaatctaccggcgatcgaaacctatatcgagcacagcattccg
gtcagcaaatatgacccagatgccctgttgcaagagctgccggcaccgtttcgcctgcac
cgtcaacaccgtcctaacaacggtcgtggcggtaatacccagcgtcgcccgggcaaccgt
ggcccacgtaaacgtcatccggcctga
DBGET
integrated database retrieval system
