Pseudomonas sp. HLS-6: CS390_01280
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Entry
CS390_01280 CDS
T12031
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
pshl Pseudomonas sp. HLS-6
Pathway
pshl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pshl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CS390_01280 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pshl03021
]
CS390_01280 (rho)
03019 Messenger RNA biogenesis [BR:
pshl03019
]
CS390_01280 (rho)
Transcription machinery [BR:
pshl03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
CS390_01280 (rho)
Messenger RNA biogenesis [BR:
pshl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CS390_01280 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_25
AAA_22
S1CSD-TOTE-2
NACHT
Motif
Other DBs
NCBI-ProteinID:
ATR81268
LinkDB
All DBs
Position
287695..288954
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTELKQKPITDLLEMAEQMGIENMARSRKQDVIFSLLKKHAKSGEEISGDGVLEILQD
GFGFLRSADASYLAGPDDIYVSPSQIRRFNLRTGDTIVGKIRPPKEGERYFALLKVDTIN
FDRPENAKNKILFENLTPLFPNVRLKMEAGNGSTEDLTGRVIDLCAPIGKGQRGLIVAPP
KAGKTIMLQNIAANITRNNPECHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPPTRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEKPKRF
FGAARNIEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNMELPLDRKIAEKRVFPAINI
NRSGTRREELLTADDELQRMWILRKLLHPMDEVAAIEFLIDKLKQTKTNDEFFLSMKRK
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaacctgactgaactcaagcaaaagccgattaccgatctgctcgaaatggccgaacag
atgggcatagaaaatatggcccgttcgcgcaagcaagatgtgattttctccctgttgaaa
aagcatgcgaaaagcggcgaggaaatctccggtgatggcgtgctggagattctccaggac
ggtttcggtttcctgcgttcggcggatgcctcttacctggccggccccgacgatatctac
gtttcgcctagccagatccgccgcttcaacctgcgcaccggtgacaccatcgttggcaag
atccgcccaccgaaagaaggtgagcgttacttcgcactgttgaaagtcgacaccatcaac
ttcgaccgtccagaaaacgcgaagaacaagatcctgtttgaaaacctgacgccgttgttc
ccgaacgtgcgcctgaagatggaagccggtaacggttccaccgaagaccttactggccgg
gtcattgacctctgcgcgccaattggtaaaggtcagcgcggcctgatcgtcgcaccgcca
aaagcgggcaagaccatcatgctgcagaacatcgcggccaacatcacccgtaacaacccc
gagtgccacctgatcgttctgctgatcgacgagcgcccggaagaagtgaccgaaatgcag
cgcacggtgcgtggcgaagtggttgcctcgaccttcgacgagccgccaacccgccacgta
caagtggctgaaatggtgatcgagaaggccaagcgcctggtcgagcacaagaaggatgta
gtcatcctgctcgactccatcacccgtctggcccgtgcctacaacaccgtcatcccgagc
tccggcaaggtactgaccggtggtgtcgatgcccacgccctggagaagccaaagcgtttc
ttcggtgctgcgcgtaacatcgaggaaggcggttcgctgaccatcatcgccactgcgttg
gttgaaaccggttcgaagatggacgaagtgatctacgaagagttcaagggcaccggtaac
atggaactgcctctggaccgcaagatcgctgaaaaacgcgtcttcccggccatcaacatc
aaccgttccggtactcgccgcgaagagctgttgaccgccgacgacgaactgcagcgcatg
tggattctgcgcaagctgctgcacccgatggacgaagttgcggccattgagttcttgatc
gataagctcaagcagaccaagaccaacgacgagttcttcctctcgatgaagcgcaagtaa
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