Pseudomonas sp. HLS-6: CS390_20885
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Entry
CS390_20885 CDS
T12031
Name
(GenBank) tRNA pseudouridine(55) synthase TruB
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
pshl Pseudomonas sp. HLS-6
Brite
KEGG Orthology (KO) [BR:
pshl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pshl03016
]
CS390_20885
Enzymes [BR:
pshl01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
CS390_20885
Transfer RNA biogenesis [BR:
pshl03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
CS390_20885
Prokaryotic type
CS390_20885
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
TruB-C_2
PUA_3
Motif
Other DBs
NCBI-ProteinID:
ATR84804
LinkDB
All DBs
Position
complement(4450467..4451384)
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AA seq
305 aa
AA seq
DB search
MAQVKRIRRNVSGIILLDKPLGFTSNAALQKVRWLLNAEKAGHTGSLDPLASGVLPLCFG
EATKFSQYLLDSDKGYETVMQLGMTTSTADAEGEVLQTREVTVGRADIEAVLPQFRGQIS
QIPPMYSALKRDGQPLYKLARAGEVVEREARSVTIDRLELLECEGSRARLSVGCSKGTYI
RTLVEDIGEQLGCGAYVAELRRTHAGPFSLAQTVTLEELEQVHAEGGNEAVDRFLLPSDS
GLQDWPLLKFSEHSAFYWLHGQPVRAPDAPKFGMVRVQDHNGRFIGIGEVSEDGRIAPRR
LIRSE
NT seq
918 nt
NT seq
+upstream
nt +downstream
nt
gtggctcaggtcaagcgtatccgtcgtaacgtcagtggcatcatcctgctcgacaagccg
ctggggtttacctccaacgccgctttgcagaaggtgcgctggctgctcaatgctgaaaag
gcaggccatacggggagcctcgacccactggccagtggcgtattgccgctgtgcttcggt
gaggcgacgaagttttcccagtacttgctcgattctgacaagggttacgaaacggtcatg
caattgggcatgaccaccagcactgccgatgctgaaggtgaagtgctgcagactcgcgaa
gtgaccgttggtcgcgccgatatcgaagctgttttgccacaatttcgtggtcaaatcagt
cagataccgccgatgtactctgcgctcaagcgtgacgggcagccgctgtacaagctggca
cgcgcaggtgaagtagtggagcgtgaagcacgttctgttactattgatcgcctggaactg
cttgagtgtgaaggtagccgcgctcgtctttcggtgggctgcagtaaaggtacgtacatc
cgtaccctggtcgaggacatcggcgagcagttgggctgtggcgcctatgttgcagaactg
cgccgcacgcatgccgggccattcagcctggcacagactgtgaccctcgaagaactcgag
caggttcacgccgaaggcggtaatgaagcggttgatcgctttctgttaccgtccgatagc
ggtctgcaagattggcctctgctcaagttttccgagcacagtgccttctactggctgcat
ggtcagccggtaagggctccggacgcgccgaaattcggcatggtccgcgtacaggatcac
aacggtcgcttcatcggtattggtgaagtgagcgaagacgggcgaatcgcgccgcgtcga
ctgattcgatctgaatga
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