Pseudomonas sp. HN11: LVW35_21865
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Entry
LVW35_21865 CDS
T11745
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pshn Pseudomonas sp. HN11
Pathway
pshn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pshn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LVW35_21865 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pshn03019
]
LVW35_21865 (rne)
03009 Ribosome biogenesis [BR:
pshn03009
]
LVW35_21865 (rne)
Enzymes [BR:
pshn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
LVW35_21865 (rne)
Messenger RNA biogenesis [BR:
pshn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LVW35_21865 (rne)
Ribosome biogenesis [BR:
pshn03009
]
Prokaryotic type
rRNA processing factors
LVW35_21865 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TcdA_TcdB
Motif
Other DBs
NCBI-ProteinID:
UII70288
LinkDB
All DBs
Position
4801649..4804792
Genome browser
AA seq
1047 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDF
GSERHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISL
AGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLVAPADMGLIVRTAGLGRSSEEMQW
DLDYLLQLWTAIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALT
FIRQVMPQYASKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSID
INSARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKV
RECLEADRARVQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAI
LRLIEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIVILPNDHLETPHF
EVQRLRDDSPEAHSGQSSYEIAAAAAEVEEVQPAAATRTLVRQEAAVKTAPARANAPVPT
EVAAPVAAPAVMPEPSLFKGLVKSLVSLFATKEEPAAPVVVEKPAAERPARNEERRNGRQ
QSRNRNGRRDEERKPREERAPREERAPREERAPREAREETPTVERAPREERAPRTPRAPR
EDRKPRGEREERVRELREPLDAAPAVAGAAVAEERPARQPREERAPREERQPRAPREERQ
PRAEQAAAASEEEVLTGEEQLQEDGQEGAEGDRPRRRSRGQRRRSNRRERQRDANGNVIE
GSEETGENAEAATSEPTGAELAAGLAVTAAVASSVISAPAEAQAHEQAERATAAVEETVA
IEAPAAETPVVEAPVVEAPVVEAPAVEATTPIEAPVVPEVEVAQAPEAQPEVEVVVAEPA
PVVEPEPVVEAVVEAPVVQATPEVREVREEQTAFQWTAEPAAPVEAPTPAPVAEEAPAPV
AEVVISEPAPVVEPAPVAETAPAVEAPVVAEVAAPVVEAAPVSALTENGRAPNDPREVRR
RRKEAEAAAAAAAAAAQEAEHESKPLV
NT seq
3144 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctgattaacgcaacccaacccgaagagttgcgtgttgcactggtagat
ggccaacgcctctacgacctggacattgaatccggtgcacgcgagcaaaaaaaggccaac
atctacaaaggccgtattactcgcatcgaacccagccttgaggctgcctttgtcgatttc
ggctccgagcgccacggcttcctgcccctcaaagaaatctcccgcgaatacttcaagaaa
gcccccgaaggccgcgtgaatatcaaggacgtcctgagcgaaggccaggaagtcatcgtc
caggtcgagaaagaagaacgtggcaacaagggcgcagccctgaccaccttcatcagcctg
gccggccgttacctggtgctgatgccgaacaacccacgcgccggcggcatttcccgccgc
atcgaaggcgaagagcgcaacgaactgcgcgaagcgctgaatggcctggtcgcaccggcc
gacatgggcctgatcgttcgcactgcaggcttaggccgcagcagcgaagaaatgcagtgg
gacctcgactacctgctgcaactgtggaccgctatcaaagaagcgtccctggatcgttcc
gcgccgttcctgatctaccaggaaagcaacgtgatcatccgcgccatccgcgattacctg
cgccaggacatcggcgaagtgctgatcgacagcgttgaagcccaggacgaagccctgacc
ttcatccgccaggtgatgccgcaatacgccagcaagatcaagctgtacgaagacagcgtt
ccgctgttcaaccgtttccagatcgaaagccagatcgagaccgccttccagcgtgtggtc
gaactgccttccggtggctccatcgtgatcgacccgaccgaagccctggtgtccatcgac
atcaactcggcccgtgcgaccaaaggcagcgacatcgaagaaaccgccctgcagaccaac
ctggaagcggctgaagaaatcgcccgccagctgcgcctgcgtgacatcggcggcctgatc
gtgatcgacttcatcgacatgacccccgccaagaaccagcgcgccgtggaagagaaagtc
cgcgaatgcctggaagcggaccgtgcccgcgtgcaagtcggccgcatctcgcgcttcggc
ctgctggaaatgtcccgtcagcgcctgcgtccttccctgggcgagagcagcggcatcgtt
tgcccgcgttgcaacggcaccggcatcatccgtgacgttgagtcgctgtccctggcgatc
ctgcgcctgatcgaagaagaagccctgaaagaccgcaccgccgaagtccgcgcgcaagtg
ccgattccggttgcagctttcctgctcaacgaaaaacgcaactcgatcaccaagatcgaa
ctgcgcacccgtgctcgcatcgtcatcctgccgaacgatcacctcgaaaccccgcacttc
gaagtgcagcgcctgcgcgatgacagcccggaagcccacagcggccagtccagctacgaa
atcgccgccgctgctgctgaagtggaagaagtccagccagccgccgcgactcgcaccctg
gttcgccaggaagccgccgtcaagaccgctccagcacgcgccaatgcaccggtaccgact
gaagtcgccgcgccagttgccgcaccggccgtcatgcctgagccaagcctgttcaaaggc
ctggtgaaatcgctggtcagcctgttcgctactaaagaagagccagccgctccggttgtg
gttgaaaaaccggccgccgagcgcccagctcgcaatgaagagcgtcgcaacggtcgtcag
cagagccgtaaccgtaacggtcgccgtgacgaagaacgcaagcctcgcgaagaacgtgcg
ccgcgtgaagaacgcgctccacgtgaagagcgtgcacctcgcgaagctcgtgaagaaaca
ccaaccgtagaacgtgcaccgcgcgaagagcgcgcaccgcgtactccacgcgccccacgt
gaagaccgcaagccacgtggcgagcgtgaagaacgtgtgcgtgaactgcgcgagccgctg
gatgcagcgcctgccgttgccggcgccgctgtcgctgaagagcgcccagctcgccaaccg
cgcgaagagcgtgcgccacgtgaagagcgtcaaccacgcgctccccgtgaagaacgccaa
ccacgtgccgagcaagccgctgccgccagcgaagaagaagtgctgactggcgaagagcag
ttgcaggaagacggtcaggaaggcgccgaaggcgatcgtccacgccgccgctcccgtggt
cagcgtcgtcgcagcaaccgtcgtgagcgtcaacgcgatgccaacggcaacgtgatcgaa
ggctcggaagagaccggcgagaacgcagaagccgctaccagcgaaccgactggcgccgaa
ctggctgccggcctggccgttaccgctgcggttgccagctcggtcatcagcgcaccggct
gaagcccaggctcacgagcaggctgaacgcgctactgctgccgttgaagaaaccgtagcg
attgaagcacctgctgccgaaaccccagtggttgaagcgccggttgttgaagcgccagtc
gtagaggcaccagctgtcgaagccactaccccaatcgaagcaccggttgttccggaagtg
gaagttgcccaggcgcctgaagcccaaccagaagttgaagtggtggtcgctgagccggca
cctgtggttgagcccgagccagtggtcgaagccgttgttgaagcaccggttgtccaagca
actccagaagtgcgagaagttcgtgaagaacaaaccgccttccaatggactgccgagcca
gcggctccggttgaagcgccaacccctgcccccgtagcagaagaagcgccagcaccggtt
gccgaagtcgtgatttccgagccagccccagtagttgagcctgctccggtcgcagaaacc
gcacctgcagttgaagcgccggtggttgccgaagtggcagcgccagtggttgaagccgca
ccggtcagcgccctgaccgaaaacggccgtgcaccgaacgacccacgtgaagtgcgtcgc
cgtcgcaaggaagctgaagccgccgcagcagcagctgctgctgctgcacaggaagcagag
cacgagagcaaacctctcgtctga
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