Pseudomonas sp. HN11: LVW35_23015
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Entry
LVW35_23015 CDS
T11745
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
pshn Pseudomonas sp. HN11
Pathway
pshn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pshn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
LVW35_23015 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pshn03400
]
LVW35_23015 (sbcB)
Enzymes [BR:
pshn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
LVW35_23015 (sbcB)
DNA repair and recombination proteins [BR:
pshn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
LVW35_23015 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
LVW35_23015 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LVW35_23015 (sbcB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ExoI_SH3
ExoI_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
UII70497
LinkDB
All DBs
Position
complement(5028606..5030033)
Genome browser
AA seq
475 aa
AA seq
DB search
MTSIFWYDYETTGINPRSDRPLQVAGIRTDFDLNEIGAPVNLYCQPSEDILPHPVACAIT
GITPAILAEKGLAEADFMTRVHAELAAPGTCGAGYNTLRFDDEMTRYSLYRNFFDPYARE
WQGGNSRWDLIDVVRTAYALRPEGIEWPQQDGRVTLKLERLTEANGIDHGQAHDALSDVR
ATIALARLVREKQPRLYEWLFQLRSKQRVMDQVRLLQPMVHISGRFSAERHYLGVVLPLA
WHPRNRNALIVCDLGLDPQGLLDLDAVTLRQRLYTRRDDLAEGELPVPLKLVHINRCPVV
APLNVLRAQDRERLHLDMNIYQERALRLTDAQELWRDKLAAIYAEEDFTASTDPEQQLYD
GFIGDRDRRLCEQVRAAEPAQLSSQQWPFDDHRLPELLFRYRARNFPHTLNSEEQQRWIL
FCQQRLSNREWGAPNTLEAFKQARQEFSVSATPFQHGVLEQWQEYADALAARVNL
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
gtgacctccattttctggtacgactatgaaaccaccggcatcaatccgcgcagcgatcgc
ccactccaggtagctggcattcgcacggacttcgacctcaatgagatcggcgcgccagtc
aatctttattgccagcccagcgaggatatcctgcctcaccccgtcgcctgcgcgattacc
ggtatcacccccgcaatcctcgcggaaaaaggtctggccgaggccgatttcatgacccgg
gtgcatgctgaactggccgccccgggtacttgcggtgcaggctacaacaccttgcgtttt
gacgatgaaatgacgcgctacagcctgtatcgcaattttttcgacccttacgcgcgggag
tggcagggcggtaatagccgctgggatctcatcgacgtggttcgcactgcctacgccctg
cgtccggaaggcattgaatggccgcaacaggatgggcgtgtcacgctcaagctggagcgc
ctgaccgaagccaacggcattgaccatgggcaggctcacgacgcgttgtccgacgtgcgc
gccacgattgccttggctcgattggtgcgtgagaaacaacccaggctgtatgaatggctg
tttcaattgcgcagtaaacaacgggtgatggatcaggtgcgcttgctgcaaccgatggtg
catatctccgggcgcttttctgccgagcgtcattacctgggggtcgtgctgcctctggcg
tggcacccgcgtaaccgtaatgccctgatcgtctgcgacctggggcttgatcctcaagga
ttgctggaccttgatgccgttaccttgcgccagcgcctctacacccgccgtgacgatctt
gccgagggcgaactgccagtgccgctcaaattggtgcacataaatcgctgcccggtggtt
gcgcctttgaatgtgctacgggcgcaagatcgtgaacgtctgcacttggacatgaacatt
tatcaggagcgggcgctgcggctaactgacgcacaggaactttggcgcgataagttggcg
gccatttacgccgaagaagacttcacagcgagtaccgacccggaacagcagctttacgac
ggttttattggagaccgtgatcgacgtttatgtgaacaagtcagggcggccgagcctgcg
caattatcaagccagcagtggccatttgatgatcaccgtttgcctgaactattgtttcgg
taccgtgcgcgtaacttcccgcataccttgaacagcgaagagcaacaacgctggatactt
ttttgtcagcaacggttgtcgaaccgggagtggggtgcgccgaatacccttgaggcattt
aagcaggccaggcaggagttttcagttagtgcgacgccgtttcagcatggggtactggag
cagtggcaggaatatgcagatgctctcgccgccagagtcaatctgtaa
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