Pseudomonas sp. HN11: LVW35_25735
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Entry
LVW35_25735 CDS
T11745
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
pshn Pseudomonas sp. HN11
Pathway
pshn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pshn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LVW35_25735 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pshn03021
]
LVW35_25735 (rpoB)
03400 DNA repair and recombination proteins [BR:
pshn03400
]
LVW35_25735 (rpoB)
Enzymes [BR:
pshn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LVW35_25735 (rpoB)
Transcription machinery [BR:
pshn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LVW35_25735 (rpoB)
DNA repair and recombination proteins [BR:
pshn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LVW35_25735 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
7TMR-HDED
IniB
Motif
Other DBs
NCBI-ProteinID:
UII71006
LinkDB
All DBs
Position
complement(5607490..5611563)
Genome browser
AA seq
1357 aa
AA seq
DB search
MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGATKDQFRDVGLHAAFKSV
FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTYAVPLRVKVRLIIFDKESSNKAIKD
IKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARI
IPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYTTEQVLDAFYTTNVFSLKDET
LKLELIASRLRGEIAVLDIQDEKGKVIVEAGRRITARHINQIEKAGIKELEVPLDYVLGR
TTAKVIVHPATGEILAECNTELNTEILAKIAKAQVVRIETLYTNDIDCGPFISDTLKIDS
TSNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSPERYDLSAVGRMKFNRRIGRTEIE
GSGVLCKEDIVAVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRVERAV
KERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGP
GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPYRVVK
DALVTDEIVFLSAIEEADHVIAQASATMNDKKVLIDELVAVRHLNEFTVKAPEDVTLMDV
SPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARDSGVC
VVARRGGVIDSVDASRIVVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLVSKGD
RVQRSDIMADGPSTDMGELALGQNMRIAFMAWNGFNFEDSICLSERVVQEDRFTTIHIQE
LTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDARALSIEKTQLDE
IRKDLNEEFRIVEGATFERLRSALVGHKAEGGAGLKKGQDITDEILDGLEHGQWFKLRMA
EDALNEQLEKAQAYIVDRRRLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIRRRIQPG
DKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDVVLNPLGVPSRMNVGQILETHLGLAAKG
LGEKINRMIEEQRKVADLRKFLHEIYNEIGGRNEELDTFSDQEILDLAKNLRGGVPMATP
VFDGAKESEIKAMLKLADLPESGQMQLFDGRTGNKFERPVTVGYMYMLKLNHLVDDKMHA
RSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMY
KNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLETE
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcatatactgagaaaaaacgtatccgcaaggactttagcaagttgccggac
gtcatggatgtcccgtaccttctggctatccagctggattcgtatcgtgaattcttgcag
gcgggagcgaccaaagatcagttccgcgacgtgggcctgcatgcggccttcaaatccgtt
ttcccgatcatcagctactccggcaatgctgcgctggagtacgtcggttatcgcctgggc
gaaccggcatttgatgtcaaagaatgcgtgttgcgcggtgttacttacgccgtacctttg
cgggtaaaagtgcgcctgatcattttcgacaaagaatcgtcgaacaaagcgatcaaggac
atcaaagagcaagaagtctacatgggcgaaatcccattgatgactgagaacggtaccttc
gttatcaacggtaccgaacgtgtgatcgtttcccagctgcaccgttccccgggcgtgttc
ttcgaccacgaccgcggcaagacgcacagctccggcaagctcctgtactccgcgcggatc
attccgtaccgcggttcgtggttggacttcgagttcgacccgaaagactgcgtgttcgtg
cgtatcgaccgtcgtcgcaagctgccggcatcggtactgctgcgcgcactcggctatacc
actgagcaagtgctggacgccttctataccaccaacgtattcagcctgaaggatgaaacc
ctcaagctggaactgatcgcttcgcgtctgcgtggtgaaattgccgtcctggatatccag
gatgaaaagggcaaggtcattgttgaagctggccgtcgtatcactgcgcgccacatcaac
cagatcgaaaaagccggtatcaaagagctggaagtgcctctggactacgtcctgggccgc
actaccgccaaggtcatcgttcacccggctacaggcgaaatcctggctgagtgcaacacc
gagctgaacaccgagatcctggccaagatcgccaaggctcaggtcgttcgcatcgagacc
ctgtacaccaacgacatcgactgcggtccgttcatctccgacactcttaagatcgactcc
accagcaaccaattggaagcgctggtcgagatctatcgcatgatgcgtcctggtgagcca
ccaaccaaagacgccgccgaaaccctgttcaacaacctgttcttcagccctgagcgctat
gacctgtctgcggtcggccggatgaagttcaaccgtcgtatcggtcgtaccgagatcgaa
ggttcgggcgtgctgtgcaaggaagacatcgtcgcggtactgaagaccctggtcgacatc
cgtaacggtaaaggcatcgtcgatgacatcgaccacctgggtaaccgtcgtgttcgctgc
gtaggcgaaatggccgagaaccagttccgcgtaggcctggtgcgggttgagcgtgcggtc
aaagagcgtctgtcgatggctgaaagcgaaggcctgatgccgcaagacctgatcaacgcc
aagccagtggctgcggcggtgaaagagttcttcggttccagccagctttcccagttcatg
gaccagaacaacccgctctccgagatcactcacaagcgccgtgtttccgcactgggcccg
ggcggtctgacccgtgagcgtgctggctttgaagtccgtgacgtacacccgacgcactac
ggtcgtgtttgcccgatcgaaacgccggaaggtccgaacatcggtctgatcaactccctg
gccgcctatgcgcgcaccaaccagtacggtttccttgagagcccgtaccgtgtggtgaaa
gacgccctggtcaccgacgagatcgtgttcctgtccgccatcgaagaagctgatcacgtg
atcgcccaggcttcggccacgatgaacgacaagaaagtcctgatcgacgaactggtagct
gttcgtcacttgaacgagttcaccgtcaaggcgccggaagacgtcaccctgatggacgta
tcgccgaagcaggtagtttcggttgcggcgtcgctgatcccgttcctggagcacgatgac
gccaaccgtgcgttgatgggttccaacatgcagcgtcaggctgtaccgaccctgcgcgcc
gataagccgctggtaggtaccggcatggagcgtaacgtagcccgtgactccggcgtttgc
gtcgtggctcgtcgtggcggcgtgatcgactccgttgatgccagccgtatcgtggttcgt
gttgccgatgacgaagtggaaactggcgaagccggtgtcgacatctacaacctgaccaaa
tacacccgctcgaaccagaacacctgcatcaaccagcgtccgctggtgagcaaaggtgat
cgcgttcagcgtagcgacatcatggccgacggcccgtccaccgacatgggtgaactggca
ctgggtcagaacatgcgcatcgcgttcatggcatggaacggcttcaacttcgaagactcc
atctgcctgtccgagcgtgttgttcaggaagaccgtttcaccacgatccacattcaggaa
ctgacctgtgtggcacgtgacaccaagcttgggcctgaggaaatcactgcagacatcccg
aacgtgggtgaagctgcactgaacaaactggacgaagccggtatcgtttacgtaggtgct
gaagtaggcgcaggcgacatcctggtcggtaaggtcactccgaaaggcgagacccaactg
acgccggaagagaagctgttgcgtgccatcttcggtgaaaaagccagcgacgttaaagac
acttccctgcgtgtgcctaccggtaccaaaggtactgtcatcgacgtacaggtcttcact
cgtgacggcgttgagcgtgatgctcgtgcattgtccatcgagaagacccagctcgacgag
atccgcaaggatctgaacgaggagttccgtatcgttgaaggtgcgaccttcgaacgtctg
cgctccgccctggtaggccacaaggctgaaggcggcgcaggtctgaagaaaggtcaggac
atcaccgacgaaatcctcgatggtcttgagcacggccagtggttcaaactgcgcatggct
gaagacgctctgaacgagcagctcgagaaggctcaggcctacatcgttgatcgtcgccgt
ctgctggacgacaagttcgaagacaagaagcgcaaactgcagcagggcgatgacctggct
ccaggcgtgctgaaaatcgtcaaggtttacctggcaatccgtcgtcgcatccagccgggc
gacaagatggccggtcgtcacggtaacaaaggtgtggtctccgtgatcatgccggttgaa
gacatgccgcacgatgccaatggcaccccggtcgacgtcgtcctcaacccgttgggcgta
ccttcgcgtatgaacgttggtcagatccttgaaacccacctgggcctcgcggccaaaggt
ctgggcgagaagatcaaccgtatgatcgaagagcagcgcaaggtcgcagacctgcgcaag
ttcctgcacgagatctacaacgagatcggcggtcgcaacgaagagctggataccttctcc
gaccaggaaatcctggacctggcgaagaacctgcgtggcggcgttccaatggctactccg
gtgttcgacggtgccaaggaaagcgaaatcaaggccatgctgaaactggcagacctgcca
gaaagcggccagatgcagctgttcgacggccgtaccggcaacaagttcgagcgcccggtt
actgttggctacatgtacatgctgaagctgaaccacttggtagacgacaagatgcacgct
cgttctaccggttcgtacagcctcgttacccagcagccgctgggtggtaaggctcagttc
ggtggtcagcgtttcggggagatggaggtctgggcactggaagcatacggtgctgcttac
actctgcaagaaatgctcacagtgaagtcggacgatgtgaacggtcgtaccaagatgtac
aaaaacatcgtggacggcgatcaccgtatggagccgggcatgcccgagtccttcaacgtg
ttgatcaaagaaattcgttccctcggcatcgatatcgatctggaaaccgaataa
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integrated database retrieval system
