Pseudomonas sp. HN11: LVW35_27585
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Entry
LVW35_27585 CDS
T11745
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
pshn Pseudomonas sp. HN11
Pathway
pshn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pshn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LVW35_27585 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pshn03021
]
LVW35_27585 (rho)
03019 Messenger RNA biogenesis [BR:
pshn03019
]
LVW35_27585 (rho)
Transcription machinery [BR:
pshn03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
LVW35_27585 (rho)
Messenger RNA biogenesis [BR:
pshn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
LVW35_27585 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_25
AAA_22
S1CSD-TOTE-2
NACHT
Spore_III_AA
Motif
Other DBs
NCBI-ProteinID:
UII71348
LinkDB
All DBs
Position
complement(5989380..5990639)
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AA seq
419 aa
AA seq
DB search
MNLTELKQKPITDLLQLAEEMGIENMARSRKQDVIFSLLKKHAKSGEEISGDGVLEILQD
GFGFLRSADASYLAGPDDIYVSPSQIRRFNLRTGDTIVGKIRPPKEGERYFALLKVDTIN
FDRPENAKNKILFENLTPLFPTVRMKMEAGNGSTEDLTGRVIDLCAPIGKGQRGLIVAPP
KAGKTIMLQNIAANIARNNPEVHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPPTRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEKPKRF
FGAARNIEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNMELPLDRRIAEKRVFPAINI
NRSGTRREELLTADDELQRMWILRKLLHPMDEVAAIEFLVDKLKTTKTNDEFFLSMKRK
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatctgactgaactcaagcaaaagccgattaccgacctgctccagctggccgaagaa
atgggcatagaaaatatggcccgttcgcgcaagcaggacgtgattttctccctgctgaaa
aagcacgcgaaaagcggcgaggaaatctccggtgatggcgtgctggagattctccaggac
ggcttcggcttcctccgctctgctgacgcctcctatcttgccggcccagacgatatctac
gtctcgccgagccagatccgtcgcttcaacttgcgcaccggtgacaccatcgttggcaag
atccgccctccgaaggaaggcgagcgttacttcgccctgctcaaggttgacacgatcaac
ttcgatcgtcccgagaacgcgaaaaacaagattctctttgagaacctgaccccgctgttc
ccgaccgtgcgcatgaagatggaagccggtaacggttccaccgaagacctgaccggtcgt
gtgatcgacctgtgcgccccaatcggcaagggccagcgcggcctgatcgtcgcaccgccg
aaagccggtaagaccatcatgctgcagaacattgcagcgaacatcgcgcgtaacaatcct
gaagttcacctgatcgtgctgttgatcgatgagcgtccggaggaagtgaccgaaatgcag
cgcaccgtgcgcggcgaagtagttgcctccacgtttgatgagccgccaacccgccacgtg
caggttgccgaaatggtgatcgagaaggccaagcgcctggtcgagcacaagaaggacgta
gtgatcctgctcgactccatcacccgtctggcccgtgcctacaacaccgtgatcccgagc
tccggcaaggtattgaccggtggtgtcgatgcccacgccctggagaaaccgaagcgtttc
ttcggcgctgcgcggaatatcgaagaaggcggctcgctgaccattatcgccaccgcactg
gttgaaaccggttcgaaaatggacgaagtgatctacgaagagttcaagggtaccggcaac
atggaattgcccctggaccgtcgcatcgcggaaaaacgcgtattcccggccatcaacatc
aaccgttcgggcacccgccgcgaagagttgctgaccgccgacgacgaactgcagcgcatg
tggatcctgcgcaagctgctgcacccgatggatgaagtcgctgccatcgagttcctggtc
gacaagctgaaaaccaccaagaccaacgacgagttcttcctgtcgatgaagcgtaagtaa
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