Pseudomonas sp. HN11: LVW35_28295
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Entry
LVW35_28295 CDS
T11745
Symbol
tssC
Name
(GenBank) type VI secretion system contractile sheath large subunit
KO
K11900
type VI secretion system protein ImpC
Organism
pshn Pseudomonas sp. HN11
Pathway
pshn02025
Biofilm formation - Pseudomonas aeruginosa
Brite
KEGG Orthology (KO) [BR:
pshn00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02025 Biofilm formation - Pseudomonas aeruginosa
LVW35_28295 (tssC)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02044 Secretion system [BR:
pshn02044
]
LVW35_28295 (tssC)
Secretion system [BR:
pshn02044
]
Type VI secretion system
Imp/Vas secretion system core components
LVW35_28295 (tssC)
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Paralog
GFIT
Motif
Pfam:
VipB
VipB_2
BMFP
RRF
Motif
Other DBs
NCBI-ProteinID:
UII71480
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Position
6139873..6141369
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AA seq
498 aa
AA seq
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MADNTVREGASNLGATEETSEFASLLMQEFKPKTERAREAVETAVRTLAEQALAQTDLVS
NDAIKSIESIIAAIDAKLTAQVNQIIHHQDFQQLESAWRGLHYLVNNTESDEQLKIRVLN
ISKPDLHKTLKKFKGTAWDQSPIFKKMYEEEYGQFGGEPYGCLVGDYYFDQSPPDVELLG
ELSKVCAAMHSPFIAAASPTVMGMGSWQELSNPRDLTKIFTTPEYAGWRSLRESEDSRYI
GLTMPRFLARLPYGAKTDPVEAFAFEENTDGADSSKYTWANAAYAMAVNINRSFKHYGWC
SRIRGIESGGEVENLPAHTFPTDDGGVDMKCPTEIAISDRREAELAKNGFMPLLHKKNTD
FAAFIGAQSLQKPAEYDDPDATANANLAARLPYLFATCRFAHYLKCIVRDKIGSFKEKDE
MQRWLQDWILNYVDGDPAHSTETTKAQHPLAAAEVIVEEVEGNPGYYNSKFYLRPHYQLE
GLTVSLRLVSKLPSAKSA
NT seq
1497 nt
NT seq
+upstream
nt +downstream
nt
atggctgacaataccgttcgcgaaggcgcgtccaatttgggcgccaccgaagaaaccagc
gagttcgcctcgctgttgatgcaagaattcaaacccaagaccgagcgcgcccgcgaagct
gtggaaaccgccgtgcgcaccttggctgaacaggccctggcccagactgacctggtgtcc
aacgacgcgatcaagtcgattgagtcgatcatcgccgccatcgacgccaagctcaccgcc
caggtcaaccagatcatccatcaccaggacttccagcagttggaaagcgcctggcgtggc
ttgcactatctggtcaacaacaccgaaagcgatgagcagctgaaaatccgcgtgctcaac
atctccaagccggacctgcacaagaccctgaagaaattcaagggcaccgcgtgggaccag
agcccgatcttcaagaagatgtacgaagaagaatacggccagtttggcggcgaaccctac
ggctgcctggtgggcgactactacttcgaccagtcgcctccagacgtggagctgctgggc
gagctgtcgaaagtctgcgccgccatgcattccccgttcatcgctgcggcctcgccgacc
gtgatgggcatgggctcgtggcaggaactgtcgaacccgcgcgacctgaccaagatcttc
accaccccggaatacgccggctggcgttcgctgcgcgaatcggaagactcgcgctacatc
ggcctgaccatgccgcgcttcctggcgcgcctgccatatggcgccaagaccgacccggta
gaggccttcgccttcgaagaaaacaccgacggtgccgacagctccaaatacacctgggcc
aacgccgcctatgcgatggcggtgaacatcaaccgttcgttcaagcactacggctggtgc
tcgcgcatccgtggcatcgagtccggcggcgaagtggaaaatctgccggcgcacaccttc
cctaccgatgacggtggcgtggacatgaagtgcccgactgaaatcgccatcagcgaccgc
cgtgaagcggaactggcgaaaaacggtttcatgccgctgctgcacaagaaaaacaccgac
ttcgccgcgtttatcggcgcccagtcgttgcagaaaccggccgaatacgacgacccggat
gccaccgccaacgccaacctggccgcgcgcctgccgtacctgttcgccacctgccgtttc
gcccactacttgaagtgcatcgtgcgcgacaagatcggttccttcaaagagaaggacgag
atgcagcgctggttgcaggactggatcctcaactacgtggacggtgaccctgctcactcc
accgagaccaccaaggcccagcacccattggcggctgccgaagtgatcgtggaagaagtc
gaaggcaacccgggttactacaactccaagttctacctgcgtccgcactaccagctcgaa
gggctgacagtgtcgctgcgcctggtatcgaaactgccttcggcgaaaagcgcgtaa
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