Pseudoalteromonas shioyasakiensis: KQ246_01610
Help
Entry
KQ246_01610 CDS
T08873
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
psho
Pseudoalteromonas shioyasakiensis
Brite
KEGG Orthology (KO) [BR:
psho00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
psho03009
]
KQ246_01610 (rlmD)
Enzymes [BR:
psho01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
KQ246_01610 (rlmD)
Ribosome biogenesis [BR:
psho03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
KQ246_01610 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_25
TRM5-TYW2_MTfase
MTS
Methyltransf_15
Cons_hypoth95
Methyltransf_11
PCMT
PrmA
DOT1
RrnaAD
Motif
Other DBs
NCBI-ProteinID:
QWV05294
LinkDB
All DBs
Position
341438..342763
Genome browser
AA seq
441 aa
AA seq
DB search
MAQIFKAKKKSVSQKMLTLNVTAMDHQGRGVAKQGSKVCFVNGALPGEEVKALLIEDKAR
FASADCKKVLSASAHRVTPFCQHYQICGGCQLQHLNAEQQLVEKQAAVSQLFSKFAKVDD
LNWQAPLLSEERHYRRSARIAVMHDKAAKKMRVGYRAQGSKQLVSIESCDVLSSTFKDVF
SVFDVLINSHSGLSSISHLQLCEADNAAFVVIRHTKAINAELKAIVVAACDEYSWRVVWQ
SHSGEIDHSDHPMPYYQIPAYDLRFEFGLENFIQVNPQVNQAMLHQAKQWLDLQGHEQVL
DLFCGIGNFSLLIAKYAKYVIGVEGVDSAVALAKQNAQTNSLSNTDFYCFDLTKSMQSAA
WFSAELDVLVLDPSRTGAMAILEQLPLTQFKTILYVSCDPVTLARDSALILQAGFSIEKI
GLMNMFPHTGHIETMALFHRR
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atggcacagattttcaaagccaaaaagaaatccgtttcgcaaaaaatgctaaccctcaat
gtcactgctatggaccatcaaggacgaggcgttgctaagcagggaagtaaagtctgtttt
gttaatggtgctttgccgggtgaagaagtaaaagcgttattgattgaagataaggcacgc
tttgccagtgctgattgtaaaaaagtactatcagcctcagcgcatagggttactcctttt
tgtcagcattatcagatttgtggtggttgtcagttacagcaccttaatgcagaacaacaa
ttggttgaaaagcaagctgcggttagtcagctgtttagcaagtttgccaaagttgatgac
ttaaattggcaagcacctctgcttagtgaagagcgccattaccgtcgctctgcgcgtatt
gctgtaatgcatgacaaagccgcaaagaaaatgcgcgtagggtatcgagctcaagggtct
aaacaattggtgagcattgaaagctgtgatgtgctgagtagtacttttaaagacgttttt
tcagtttttgatgttcttatcaacagccattcaggtcttagtagtattagtcacctacaa
ttatgtgaagctgataatgcggcctttgtggttattaggcataccaaagctattaatgca
gagttaaaagccattgtcgtagcggcgtgtgatgaatatagctggcgtgttgtgtggcaa
tcacacagtggtgaaattgatcacagtgaccatccaatgccgtactaccagataccagct
tatgatttacgctttgaatttggccttgaaaactttattcaagttaacccccaagtgaac
caagctatgcttcatcaagcaaaacagtggcttgatttacaaggtcatgagcaggtatta
gatttattttgtggtattggcaacttttcattattgattgcaaagtatgctaaatatgtt
attggtgttgaaggggtcgattctgcggttgcattagcaaaacaaaatgcgcaaactaac
tcattgtcgaataccgatttttattgttttgatttaacaaaatcaatgcaatcagctgct
tggtttagtgccgaacttgatgtgttagtgcttgatccatcacgtactggcgcaatggca
attttagagcagttaccacttactcagtttaaaacgattttatacgtctcttgtgatcct
gttactttagcccgtgacagtgcacttattttacaagcaggctttagcattgaaaaaatt
gggcttatgaatatgttcccgcatactgggcatattgaaacgatggcgttatttcacagg
aggtaa
DBGET
integrated database retrieval system
