Pseudoalteromonas shioyasakiensis: KQ246_02575
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Entry
KQ246_02575 CDS
T08873
Symbol
truB
Name
(GenBank) tRNA pseudouridine(55) synthase TruB
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
psho
Pseudoalteromonas shioyasakiensis
Brite
KEGG Orthology (KO) [BR:
psho00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
psho03016
]
KQ246_02575 (truB)
Enzymes [BR:
psho01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
KQ246_02575 (truB)
Transfer RNA biogenesis [BR:
psho03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
KQ246_02575 (truB)
Prokaryotic type
KQ246_02575 (truB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
TruB-C_2
Shigella_OspC
Motif
Other DBs
NCBI-ProteinID:
QWV05457
LinkDB
All DBs
Position
538765..539709
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AA seq
314 aa
AA seq
DB search
MARRSKGRAIDGILLLNKPQGISSNKALQQAKGIYFAQKAGHTGALDPLATGMLPICFGE
ATKFTQFLLDTDKTYVVRAKLGERTTTSDSDGEVVETREVSVTPEQLAEQIASFLGESDQ
YPSMYSALKYQGQPLYKYAREGIEVPRKCRKINVFSLTLDEFDEANNEVQMTAHVSKGTY
IRTIVDDLGEKLGCGAHVIMLHRSAVGHYPSEKMVTLEQLEEKLQQAKADDVAPSSYLDE
LLLPMDTALVDLPVIEITQEQGVAFSHGQTVVIGRPVPDGVVKVMADGVFIGTGERHKDG
HLKSKRGLSNQLPE
NT seq
945 nt
NT seq
+upstream
nt +downstream
nt
atggctagacgcagtaaaggtcgtgctattgacggcatcttattacttaataagccgcaa
ggtatttcatcaaacaaagcattgcagcaagcaaagggaatatactttgctcaaaaagca
ggccacaccggtgcgcttgatccgctcgcgacgggtatgctgcctatttgttttggtgaa
gcgactaagtttacccagtttttgctcgatacagacaaaacctatgttgttcgtgccaaa
cttggtgagcgaactacaacgtctgattcagatggtgaagtggttgaaacgcgtgaagta
tcggtaacacctgagcaattagctgagcaaattgccagtttcttaggtgaatcggatcaa
tacccttcgatgtactctgcgcttaaataccaaggtcagcctttgtataaatatgcccgc
gaaggcattgaagtgccgcgtaagtgtcgaaaaattaatgtatttagtttaacgcttgat
gagtttgatgaagctaataacgaagtacaaatgacggcacatgtatctaaaggcacttat
attcgtactattgttgacgacttaggtgaaaagcttggctgtggtgctcatgttatcatg
ttacaccgcagtgcagttggccattatccaagtgagaaaatggtcactcttgagcaactt
gaagaaaagctacagcaagcaaaagcagacgatgttgcaccttcaagctacctcgatgag
ctactattgccaatggatactgctttggttgacttacctgtgattgagattacccaagag
cagggcgtggcatttagtcatggtcaaacagtagtgattggcaggcctgtaccagatggg
gtagtaaaggtaatggctgatggggtgttcattggtaccggtgagcgccataaagatggc
cacttaaaatcaaagcgtggcttatcaaatcagctgcctgagtaa
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