Pseudoalteromonas shioyasakiensis: KQ246_02585
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Entry
KQ246_02585 CDS
T08873
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
psho
Pseudoalteromonas shioyasakiensis
Pathway
psho03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psho00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KQ246_02585 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psho03019
]
KQ246_02585 (pnp)
03016 Transfer RNA biogenesis [BR:
psho03016
]
KQ246_02585 (pnp)
Enzymes [BR:
psho01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
KQ246_02585 (pnp)
Messenger RNA biogenesis [BR:
psho03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
KQ246_02585 (pnp)
Transfer RNA biogenesis [BR:
psho03016
]
Prokaryotic type
tRNA degradation factors
KQ246_02585 (pnp)
BRITE hierarchy
Motif
Pfam:
RNase_PH
S1
RNase_PH_C
PNPase
KH_1
S1_2
KH_2
aRib
SLS1_KH2
DUF3016
Motif
Other DBs
NCBI-ProteinID:
QWV05459
LinkDB
All DBs
Position
540333..542462
Genome browser
AA seq
709 aa
AA seq
DB search
MQAIIKEFQLGQHTVTLETGAIARQADGAVLASIGDTSVLVTVVGKRDAQPGQDFFPLTV
NYQERMYAAGRIPGGFLKREGRPNDGETLIARLIDRPIRPLFPDGFVNEVQVIATVVSVN
PEIQPDMVAMIGTSAALAISGIPFNGPIGASRVGFINGEYVLNPTLAELEESQLDLVVAG
TDNAVLMVESEAETLSEEVMLGAVVYGHVQSQAIINAINEFKAEAGKPAWDWTAPEKNVT
LAEKISAIAAEKVGEAYRITDKVARKEALGVAKEEVVATLTAELAEGEELDTQEVGKLFG
SLEKEIVRGRIIAGEKRIDGREPDMIRALDVMTGVLPRTHGSAIFTRGETQALVTATLGT
ERDSQLIDDLTGTNKNHFMLHYNFPPFCVGETGFVGSPKRREIGHGNLAKRGIAAVLPTL
TDFPYSIRVVSEITESNGSSSMASVCGTSLALMNAGVPIKASVAGIAMGLVKEGEDFVVL
SDILGDEDHLGDMDFKVAGTSNGITALQMDIKIEGITKEIMQIALKQAKAARLHILGVMD
EAISAPSEELSQFAPRIYTMQIPAKKIAEVIGKGGATIRQLTEETGTTIEIEDDGTIKIA
ATDGISANDAIKRIEQLTAELEVGTIYTGKVVRIVDFGAFVNILPGKDGLVHISQISTER
VNNVTDHLSEGQEVKVKVLEVDRQGRVRLSIKEAMESAAEEKAEESKDA
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
gtgcaagcaattattaaagaatttcaactaggtcaacacactgtgactctagaaactggt
gctatcgctcgtcaagctgacggcgcagtactagcaagcattggcgatacttcagtatta
gttactgttgtaggcaagcgcgatgcacaaccaggtcaagacttctttccactaacagtt
aactaccaagagcgtatgtacgctgcgggtcgtatccctggtggtttccttaagcgtgaa
ggtcgtcctaacgatggcgaaacgcttatcgctcgtttaatcgaccgtccaatccgtcca
cttttcccagacggtttcgtaaacgaagtacaagtaattgcgacagttgtttctgttaat
ccagaaatccaacctgacatggttgctatgattggtacttcagcagctcttgctatctct
ggtatcccattcaatggtcctatcggtgcatcacgcgttggtttcatcaacggcgaatat
gtacttaacccaacactagctgagcttgaagagagccaattagacctagttgttgcaggt
actgataacgcagtacttatggttgaatcagaagctgaaacactatctgaagaagtaatg
ttaggtgcggttgtttatggtcatgtgcaatctcaagctatcatcaacgcaatcaacgaa
ttcaaagctgaagcaggtaaaccagcttgggattggactgcaccagagaaaaacgtaaca
cttgctgagaaaatctctgcaatcgctgctgaaaaagtaggtgaagcataccgcatcact
gacaaagtagcgcgtaaagaagcactaggtgtagcgaaagaggaagttgttgctacttta
actgcagagcttgctgaaggcgaagagctagatacacaagaagttggtaaactatttggt
tctttagaaaaagaaatcgttcgtggccgtatcatcgcaggtgagaagcgtatcgatggt
cgtgaaccagatatgatccgtgcactagacgtaatgacaggggttttacctcgtactcac
ggttctgcaatctttactcgtggtgagacgcaagcacttgttactgcaacacttggtaca
gagcgtgattcacagttaatcgatgatttaactggtactaacaaaaaccactttatgctg
cactataacttccctccgttctgcgtaggtgaaactggttttgttggctcacctaagcgt
cgtgagatcggtcacggtaacttagctaagcgtggtattgcagctgtattaccaacgtta
actgacttcccatactcaatccgtgttgtttcagaaatcactgaatcaaatggttcatcg
tctatggcatcagtatgtggtacgtcattagctcttatgaatgctggtgtaccaattaaa
gcatctgttgctggtattgcgatgggtctagttaaagaaggcgaagatttcgttgttctt
tctgacatcttaggtgatgaagatcacttaggtgacatggactttaaagtagcgggtact
tctaatggtatcactgcattacaaatggatatcaagatcgaaggtatcactaaagaaatc
atgcaaatcgctcttaaacaggcgaaagcagcacgtttacacatcttaggtgttatggac
gaagcgatttcagcaccttctgaagagttatctcagttcgcgccacgcatttacacaatg
caaatccctgcgaagaaaattgctgaagttatcggtaaaggtggcgcaactatccgtcaa
cttacagaagaaactggtactacgattgaaatcgaagatgacggtacaatcaagatcgca
gcaactgatggcatcagcgctaacgatgctattaagcgtatcgagcaattaactgctgag
ctagaagtaggtactatctacactggtaaagttgttcgtatcgttgattttggtgcgttc
gttaatattcttccaggtaaagatggtctagtgcacatttcacaaatcagcactgagcgt
gttaacaacgtgactgaccacctgagcgaaggccaagaagttaaagttaaagttcttgaa
gtagatcgccaaggtcgtgtacgtctaagcatcaaagaagctatggaatcagctgctgaa
gaaaaagcagaagagtctaaagacgcttaa
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integrated database retrieval system
