Pseudoalteromonas shioyasakiensis: KQ246_03585
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Entry
KQ246_03585 CDS
T08873
Name
(GenBank) DEAD/DEAH box helicase
KO
K19789
DNA repair protein RadD
Organism
psho
Pseudoalteromonas shioyasakiensis
Brite
KEGG Orthology (KO) [BR:
psho00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psho03400
]
KQ246_03585
DNA repair and recombination proteins [BR:
psho03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factor
KQ246_03585
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
ResIII
Helicase_C
DEAD
SWI2_SNF2
ERCC3_RAD25_C
AAA_30
AAA_22
DZR
AAA
AAA_16
T1R_D3-like
Zn_Ribbon_1
Flavi_DEAD
Zn_ribbon_3
SLFN-g3_helicase
DUF601
Motif
Other DBs
NCBI-ProteinID:
QWV05606
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All DBs
Position
774845..776590
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AA seq
581 aa
AA seq
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MKYVLRPYQQEAVARTVAHFRQTDDAALIVLPTGAGKSLVIAELARIAKQKIMVLAHVKE
LVEQNAEKYTSFGFKASIFSAGLKQKSLTEQVTFASVQSLARNTKQLTDAYSLLIIDECH
RVSGDEKSQYGRVIASLKKQNPSLKVLGLTATPFRMGMGWVYHHHYHGFVRGDSDAPFKK
CIFELPLRYMIKNGYLTPPHEVDAAISHYDFSSLPSDSFGRYSVENMNALLKDNTRATKA
IINQVIEYSEQRHGVMIFAATVMHAKEITGYLPEHNTALITGDTDNQERDRIINQFKAKK
IKYLVNVSVLTTGFDAPHVDYIAILRPTESVSLYQQIVGRGLRLSEGKEDCLVIDYAGNG
FDLFYPEVGSIKAQSDNEPVQVLCPGCGFANIFWGKTDSEGKVVEHFGRRCQGLLENDEV
QVQCDYRFRFKECEHCGEQNDIAARQCQSCGAMMADPDDKLREALNLKDALVLRCSGLSA
QLLAKGLLKISYYDEDGASCDEVFNLTNDTGRFIFNKQFGKRAAPGYSPVEWQSAEQVVE
LQKQLLAPDFVIARKNKKYGWKVAEKLFDYQGSFRKANQLS
NT seq
1746 nt
NT seq
+upstream
nt +downstream
nt
atgaagtacgtactcagaccctatcaacaagaggccgtagcacgcacagttgctcacttt
cgacaaactgatgatgcagcacttattgtgttaccaacaggtgcaggtaagagtcttgtt
attgctgaacttgcgcgtattgccaaacaaaaaattatggtgcttgctcatgttaaagag
ttggtagagcaaaacgctgagaaatacaccagctttggttttaaggccagcatattttca
gcgggtttaaagcaaaagtctttaactgaacaagtcacctttgcaagtgtgcagtcactg
gcgcgaaatacaaaacagctaaccgacgcctattcattattgatcattgatgagtgccac
cgtgtaagcggtgatgaaaaaagccaatacggacgggtgatagcgagtctaaaaaaacaa
aatcctagtcttaaagtacttggactaaccgcgactccatttcgaatgggcatggggtgg
gtttatcatcatcactatcatggctttgttagaggtgatagcgatgcgccatttaaaaag
tgtatttttgagttaccactgcgatatatgatcaaaaatggctatttaacgccgcctcac
gaggtggatgctgcgattagtcattatgacttttcatcactgccgagtgattcatttggt
cgttacagtgtcgagaatatgaatgcgttattgaaagataacactcgcgcgacaaaagct
attatcaaccaagtaatagaatatagtgagcagcgtcatggtgtaatgatctttgctgca
actgtgatgcacgccaaagaaataacaggctacttacctgagcataatactgcactgatt
actggtgataccgataatcaagaacgcgataggattattaatcaatttaaagcaaaaaaa
ataaagtatttagtcaatgtatcagtacttacgacaggctttgatgcccctcatgttgat
tacatcgcaattttaaggcctacagaatcggtgagtttataccaacaaattgtaggtagg
ggacttcgtttaagcgaaggtaaagaagattgcttagttattgactatgctggtaatggc
tttgatttgttttatcctgaggtaggtagtatcaaagcacaaagtgacaatgagccagta
caagtactttgccctggttgtgggtttgcgaatattttttggggtaaaactgatagcgaa
ggtaaagttgttgagcactttggcaggcgttgccaagggttgctggaaaatgatgaagtg
caagtacagtgcgattatcgttttcgttttaaagaatgtgagcactgtggtgaacaaaat
gacatagcagcaaggcagtgtcagtcatgtggtgctatgatggcagatcctgatgataaa
ctaagagaagcgcttaatctaaaagatgctttggtattaaggtgtagtggtttgtcggca
cagttgcttgctaaaggtttacttaaaattagttactatgatgaagacggtgcaagttgt
gatgaagtatttaatttaaccaacgatacggggcggtttatctttaataagcaatttggc
aaacgagcggcacccggttacagtcccgttgaatggcaaagcgcagaacaagttgttgaa
ttacagaagcaactacttgcaccagactttgtgattgcccgtaaaaataaaaaatacggt
tggaaagtggctgaaaagctatttgattatcaggggagttttcgtaaggcgaatcaattg
agttga
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