Pseudoalteromonas shioyasakiensis: KQ246_04640
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Entry
KQ246_04640 CDS
T08873
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
psho
Pseudoalteromonas shioyasakiensis
Pathway
psho03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
psho00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KQ246_04640 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psho03400
]
KQ246_04640 (mfd)
Enzymes [BR:
psho01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KQ246_04640 (mfd)
DNA repair and recombination proteins [BR:
psho03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
KQ246_04640 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
SNF2-rel_dom
Cas3-like_C_2
UB2H
ERCC3_RAD25_C
Glyco_tran_WecG
RecG_dom3_C
AAA_30
Motif
Other DBs
NCBI-ProteinID:
QWV05765
LinkDB
All DBs
Position
complement(993902..997375)
Genome browser
AA seq
1157 aa
AA seq
DB search
MAFAQWAALPWVKSEKDKIQWGQLTGSGLSIAIAEGVKQHNELVVIVTPDTPSALRLETE
LEFLLPENPVMVFPDWETLPYDHFSPHQDIISARLATLNTLKKEQQSVLIVPVSTLMLRT
APASFIYGSTLNFKVGDTLDTHTLRENLEQAGYLHVQQVMEHGEYAIRGSIVDLYPMGSP
HPFRLDFFDDELDSIRLFDVESQRSDEKVDKIELLPAHEFPTNDSDIERFRINYREQFGA
SSEQDSIYMQVTKGTWPAGIEYYMPLFFDELATIFDYLPSNTTFMHFGDIEHAADQFWHD
VNVRYENRRVDPLRPLLEPVKLYQSVNELFGEFGKYARIRLSQAKLGTKAGHTNLASKEL
PNVRIDHKLHEPYQGLINYVASEKKQKGRVLLSVESDGRRESLLTLLKPSGLKLKEFESF
SDFTNSVSDVGLIVSPLEQSVVLDGKPRLTIITEQELLGIKVSQRRRRKHKYEASQDALI
RNLAELREGQPIVHLDHGVGRYQGLETIDAAGVITEFVTIIYANEAKLYVPVSALHMLSR
YSGGEEASAPLHKLGSDAWEKAKKRAAEKVRDVAAELLDIYAKRQAKPGNKFKLDGSAYR
QFSDSFPFEETDDQRNAIESVLGDMQSKQAMDRLVCGDVGFGKTEVAMRAAFVAVNDNKQ
VAVLVPTTLLAQQHYENFKDRFADLPIEVGVLSRFNSTKEQKDTLEKMAEGKLDIVIGTH
KLIQQDIQFKDLGLLIVDEEHRFGVRQKEKIKALRADVDILTLTATPIPRTLNMAMSGMR
DLSIIATPPAKRLAVKTFVRQRDAELIREAILREIKRGGQVYFLHNNVETIDRVAEEISE
WVPEASVTTAHGQMRERELEQIMSDFYHQKYNVIVCTTIIETGIDVPTANTIIMDRADKL
GLAQLHQLRGRVGRSHHQAYAYLLTGNPKSLSKDAVKRLEAIESLEDLGAGFALATHDLE
IRGAGELLGDDQSGQMQTIGFSLYMEMLEQAVNSLKEGKEPTLENLLGQQTEVDLKLPAL
LPDDYIHDVNARLGIYKRIASCANLNDMDELQVELIDRFGLLPDATKNLFSLQQLKLQAS
NLGIKKIEANPKGGYFEFSQHTKVNPSFIIGLIQSAPQVYKMDGANKLRFAISEANARER
LKMVTAMIADFEKKVSH
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atggcgtttgcgcaatgggcagcattgccttgggtaaaatctgagaaagataaaattcaa
tggggacaacttactggtagcggacttagcatcgccatcgcagaaggtgtaaaacaacac
aacgagctggttgtgatagtcaccccagatacgccaagcgccctacgccttgaaactgag
ttagaatttctattgcctgaaaacccagtcatggtctttcctgactgggaaacgctgcct
tatgatcatttttcaccacaccaagatattatttctgcacgcttagccacgttaaacaca
ttaaaaaaagaacaacaaagtgttttaatcgtacctgtatcaactttgatgcttcgtaca
gcgccagcatcatttatttatggatcaacccttaactttaaagtgggtgacaccttagat
acgcacactctacgtgaaaatcttgaacaagcaggctatttgcatgtacaacaagtgatg
gagcatggtgaatatgctatccgtggctctatcgttgacttgtatcctatgggtagccct
cacccattccgtttagacttttttgatgatgagctcgacagcattcgtttatttgatgtt
gaaagccagcgttcagatgaaaaagtagacaaaattgagctgttgccagctcatgagttt
ccaactaacgactctgacattgagcgttttcgtatcaattatcgtgagcaatttggcgca
agttctgaacaagactcaatttatatgcaggtcaccaaaggtacatggcctgccggtata
gaatattatatgcctctgttctttgatgaattggcaactatattcgattacttacctagc
aatacgacgtttatgcattttggcgatattgaacatgctgctgatcaattttggcatgat
gtaaatgttcgctatgaaaaccgccgtgttgatccacttagaccattacttgaacctgta
aagctatatcaaagcgttaatgaactctttggtgagtttggtaaatacgcacgtattcgt
ttatctcaagcgaaactaggcactaaagcaggccatacaaaccttgccagtaaagagcta
ccaaacgtacgtatagatcataagctacatgagccttaccaaggtttaattaactatgtt
gctagtgagaaaaaacaaaaaggccgcgtactgctgtcggttgaatctgacggacgccgc
gaatctttactgacactattaaaaccaagtggtttaaagctcaaagaattcgagtctttc
agcgattttacaaatagtgttagtgatgttggcttaatagtatcgccacttgaacaaagt
gtggtgttagacggtaaaccgcgtttaaccattatcactgaacaagaattattaggcatt
aaagtatcgcaacgtagacgtcgtaaacataaatacgaagccagccaagatgcacttatt
cgtaatcttgctgaactgcgtgaaggccagccaattgttcaccttgatcatggtgtaggt
cgctatcaagggcttgaaacaattgatgctgccggtgtgattactgagtttgttacgatc
atctacgccaacgaggcaaaactatacgtacctgtttctgcgttacatatgcttagccgt
tattctggtggcgaagaggcctctgccccgctccataaattgggctccgatgcatgggaa
aaagccaagaaacgtgccgctgaaaaagtccgtgatgtcgccgcagaattattagatatt
tacgcaaaacgccaagcaaagcctggcaataagtttaagctggatggcagtgcttatcga
cagtttagcgatagcttcccatttgaagaaaccgatgatcaacgtaatgccattgaatct
gtgcttggagatatgcaaagtaaacaggcaatggatcgtttagtatgtggtgacgtaggc
tttggtaaaacagaagtggccatgcgggctgcttttgttgccgtaaatgataacaagcaa
gttgctgtacttgtgccaacgacactgcttgctcagcaacattatgaaaactttaaagat
cgtttcgccgatttacctattgaagttggcgttttatcacgcttcaactcaacaaaagag
caaaaagacacgcttgaaaaaatggctgagggcaaattagatattgttattggtactcat
aaactgatccaacaagatattcaatttaaagatcttggtttattgattgttgatgaagag
caccgttttggtgtgcgtcaaaaagagaaaatcaaagcattacgtgccgatgtcgatatt
ttaacactcactgcgacccctattccacgtacattaaacatggcgatgagtggcatgcgt
gacctgtcaatcatagccacaccgcctgcgaaacgtttagcggttaaaacctttgttaga
caaagagatgcagaacttattcgcgaagcaattctgcgtgaaattaaacgcggtggtcag
gtgtatttcttacataataatgttgaaactatcgaccgagttgctgaagaaataagtgaa
tgggttcctgaagctagcgtaacaacagcacatggccaaatgcgcgagcgtgagcttgag
caaattatgagtgatttttatcaccaaaaatataacgtgattgtatgtaccaccattatc
gaaacaggtatcgatgtaccgacagccaacaccattattatggatagagcagataagctt
ggccttgcgcagctgcatcaattacgtggtcgtgttggccgtagccatcaccaagcgtat
gcctatcttctcactggtaaccctaaatcactcagtaaagatgccgttaaacgccttgaa
gcaattgaatcacttgaagaccttggagccggttttgctctagcaacccatgacttagaa
attcgtggtgccggtgagttgctaggtgacgatcaatcaggtcaaatgcaaaccattggc
tttagcttgtatatggagatgcttgagcaagctgtaaactcgctaaaagaaggcaaagag
ccaaccctagagaacttacttggccagcaaactgaagttgacttaaagctacctgcatta
ttacccgatgattatattcatgatgtaaatgcgcgattaggtatctataaacgcattgca
agctgtgctaatctcaatgacatggacgaattacaagtagagttgattgaccgttttggc
ctactgcctgatgctacgaaaaacttattcagtttgcagcaattaaaactacaagcaagt
aatcttggcattaagaagattgaagcaaacccgaaaggtggctattttgagtttagccag
catacaaaggttaaccctagcttcatcattggtttgatacaaagtgcaccgcaggtgtat
aaaatggatggcgcaaacaaactgcgctttgcaattagcgaagccaacgctcgtgaacgc
ttaaaaatggtcactgcaatgattgcagattttgagaaaaaggttagccattaa
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