Pseudoalteromonas shioyasakiensis: KQ246_07495
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Entry
KQ246_07495 CDS
T08873
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
psho
Pseudoalteromonas shioyasakiensis
Pathway
psho03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psho00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KQ246_07495
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psho03019
]
KQ246_07495
Enzymes [BR:
psho01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KQ246_07495
Messenger RNA biogenesis [BR:
psho03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KQ246_07495
BRITE hierarchy
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
CMS1
AAA_25
Motif
Other DBs
NCBI-ProteinID:
QWV06237
LinkDB
All DBs
Position
complement(1622876..1624282)
Genome browser
AA seq
468 aa
AA seq
DB search
MSFDGLGLSPALVNAVLEKGYEAPTPIQSQAIPAIIEGRDVMAAAQTGTGKTAGFTLPLI
ERLSKGPKAGGNKVRALVLAPTRELALQVSENVEQYAKHSNVSSFVVYGGVKINPQMMRL
RKGVDILVATPGRLLDLHNQNALKFDDLEVLILDEADRMLDMGFIHDIKRIIAKLPTKRQ
NLMFSATFSDEIRELAKGLINDPVEISVAAKNTTAKSVTQSVYALDKSRKTALLSHLIRT
NDWQQVLVFCRTKHGANRLVKQLERDDIVGAAIHGNKSQGARVKALEGFKSGEVRVLVAT
DIVARGLDIVELPHVVNYDLPNIYEDYVHRIGRTGRAGASGHAISFVTAEDAVDLYGIER
FIGELIPRATEAGFEPSNPVPERELDARPIKPKKPKKAKQPFSKPKSDSKKPNSNGSGIG
PRRGGSGKKSNAKKASDEQTQSPWAKRQSVGGNSQRRRRPKNDGSNNS
NT seq
1407 nt
NT seq
+upstream
nt +downstream
nt
atgagttttgatgggttaggtttatcaccagctttagtaaatgcagttttagaaaagggc
tatgaagcaccaacgcctattcaatcacaagctatccctgcgatcattgaaggtcgcgat
gttatggccgcagcgcaaactggcacaggcaaaaccgcgggttttacgctgccgctaatt
gagcgcttgtcaaaaggccctaaagcaggtggcaataaagtacgtgcattagtattggca
ccaactcgtgagcttgctttgcaagtaagcgaaaatgttgagcaatatgctaagcattca
aatgtcagctcatttgtagtgtatggtggtgttaaaattaacccgcaaatgatgcgcctt
cgcaaaggtgttgatattttagtggcaacaccaggtcgtttattagacctacacaatcaa
aatgctcttaagtttgatgatttagaagtactgatccttgatgaagccgatcgtatgctt
gatatgggctttatccatgatatcaaacgtatcattgctaaactgccaactaaacgtcaa
aacctgatgttctcagcgactttctctgatgaaattcgtgagcttgcaaaagggctaatt
aacgatccggttgaaatttcagttgcagcaaaaaacacgaccgctaaatcggttactcaa
tcagtttatgcactagataaatcgcgcaaaacagcattacttagccacttgatccgtact
aacgattggcaacaagtattggtattttgtcgtaccaaacatggtgctaaccgtttagtt
aagcagcttgaacgcgatgatattgtgggtgctgccattcacggaaataaatcgcaaggc
gctcgtgttaaagcactcgaaggctttaaatcaggtgaagtgcgcgtactagtggcaacc
gatatcgttgcccgaggtcttgatattgttgagctacctcacgttgttaactacgattta
ccgaatatttatgaagattacgtacaccgtatcggccgtacaggccgagcaggtgcatcg
ggtcatgctatttcgtttgtgacagctgaagatgcagttgatctttacggtattgaacgt
tttattggtgaattgatcccacgcgcgactgaagcaggttttgaaccaagcaatcccgtg
cctgaacgagagcttgatgcacgcccaattaaacccaaaaagccgaaaaaagccaaacag
ccgttttctaagcctaagtcggatagtaaaaaaccaaatagcaatggcagtggcataggt
ccacgccgtggtggttctgggaaaaaatctaatgccaagaaagcaagtgacgagcaaaca
caaagcccatgggctaagcgtcagtctgtaggggggaattctcagcgcagacgtcgccct
aagaatgatggctcaaataacagctaa
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