Pseudoalteromonas shioyasakiensis: KQ246_08680
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Entry
KQ246_08680 CDS
T08873
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
psho
Pseudoalteromonas shioyasakiensis
Pathway
psho03030
DNA replication
psho03430
Mismatch repair
psho03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
psho00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KQ246_08680 (dnaE)
03430 Mismatch repair
KQ246_08680 (dnaE)
03440 Homologous recombination
KQ246_08680 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psho03032
]
KQ246_08680 (dnaE)
03400 DNA repair and recombination proteins [BR:
psho03400
]
KQ246_08680 (dnaE)
Enzymes [BR:
psho01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
KQ246_08680 (dnaE)
DNA replication proteins [BR:
psho03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
KQ246_08680 (dnaE)
DNA repair and recombination proteins [BR:
psho03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
KQ246_08680 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
QWV06419
LinkDB
All DBs
Position
complement(1871387..1874878)
Genome browser
AA seq
1163 aa
AA seq
DB search
MPAPQFVHLRVHSDFSMVDGLAKTKPIVAKAEELHMPALAITDQMNLCGLVRFYGAAHGA
GIKPIVGADFWLRSPEFEDEPSRITILAKDNEGYKNLTLLISKAYQRGHLFHRPVVDREW
LVEHKNGLILLSGAKDGDLGKALLKGNPGLIESVVSFYKQHFSDHYYIELIRTERALEED
YLHLAVELAAKEQLPVVATNEVVFLKPENFEAHEIRVAIHDGYTLEDKRRPKRFSEQQYL
KTAEQMAELFSDIPEALENTVEIAKRCNVTVQLGTYFLPDYPTGSLKIDDFLVKVSEDGL
EERLQFLFPDEQERKEKRVEYDERLKIELEVINQMGFPGYFLIVMEFIQWSKDNNIPVGP
GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERISMPDFDVDFCMDRRDEVIDHVAA
LYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPGDPGMTLAKAFDVEPR
LQEAYDGDEEVKELIDMCRILEGCTRNAGKHAGGVVISPTTITDFAALYCDDEGKFPVTQ
FDKNDVETAGLVKFDFLGLRTLTILQWALDMTNERLAREGKEPVDINAIPLDDKPSIELL
LRAETTAVFQLESRGMKDLIRRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREE
ISYPDVQWQHESLQPILEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEEM
AKQRSTFEEGAVNNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWMKTHYPA
EFMAAVMSADMDNTDKIVTLVDECENMKLTLLPPDVNAGEYKFTVNLQGEIVYGIGAIKG
VGEAPVEAILEARSEGGPFKDLFDFCARVDLKRLNKRVVEKLIYAGALDQLGPDKTQPGR
ATLLASLKDAMRAADQHHKAESLGQADLFGLLATEPDEVEQAFIKATDLTDNEWLDGEKE
TLGLYLTGHPINQYRKELKHYTTGRLVDLQPTNRDVQSTAAGLVISARTLINKKGNRWGL
VTLDDKSARIDVRLFPEQFEMYQDLLQVNNILVISGQVSFDNFSGGITMTARDICTIAEA
REKRIKAIKMTLNMVQIEANFFDNLQKVLEPYKFGTCPIKVFYQRPDALAEITLGTEWCV
TPSDDLIHKLSLMAAQDVELEFN
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atgccagcgccgcaatttgttcacttacgtgttcactcagatttctcaatggtggatggt
ctagctaaaactaagccgattgtagctaaagcagaagagctgcatatgcctgcattggct
attaccgatcagatgaacttatgtggtttggtgcgtttttatggtgctgcccatggtgcc
ggtattaagccaattgtcggcgctgatttttggttaagaagccctgaatttgaagacgaa
cctagtcgtattaccatcttagcgaaagataacgaaggctataaaaaccttactttattg
atctctaaagcatatcagcgcggacatttatttcatcgccctgtggttgaccgtgaatgg
ctggtggagcacaaaaatggcctaatcttattatctggtgcgaaagatggtgacttaggt
aaagccctattaaaaggtaaccctgggctcattgaatcggtagttagcttttataagcag
cattttagcgatcattattacattgagcttattcgtactgagcgtgctttagaagaagac
tatttacacctagctgttgagcttgccgcaaaagagcagttacccgtggtggcaactaac
gaagtagtgtttttaaaaccagaaaactttgaagcccacgaaatccgagttgcaatccat
gacggttacacattagaagataaacgtagaccaaaacgcttttctgagcagcaatatctt
aaaacagcggagcaaatggctgagctatttagcgatattccagaagcgttagaaaacacc
gttgaaattgccaagcgctgtaatgtgaccgtgcagctagggacttacttcttaccagat
tatccaactggatcgctgaaaattgacgacttcttggtaaaggtttctgaagatggtctt
gaagagcgtttacagtttttattccccgatgagcaagagcgtaaagaaaaacgtgttgag
tatgatgagcgtctaaaaatagagctcgaggtaatcaaccaaatggggttccctggttac
ttcttgatcgtaatggagttcatccagtggagtaaagataacaatattccggtaggacca
gggcgtggttctggtgctggttcgttggttgcttatgcactaaagattaccgaccttgat
ccgttagaatttgacttactattcgaacgtttcttgaaccctgagcgtatctcaatgccc
gactttgatgtcgacttctgtatggaccgacgcgatgaggtaatcgatcacgtagcggcg
ctttatggtcgtgacgcggtatctcagatcatcacttttggtaccatggccgcaaaagcg
gttattcgggatgtaggccgtgtattaggccacccttacggctttgttgatcgtatttcg
aaattagtaccgggcgatccgggtatgaccttagctaaagcctttgatgttgagccacgt
ttacaagaagcctacgacggtgatgaagaggtaaaagaacttatcgatatgtgtcgcatc
cttgaagggtgtacacgtaatgccggtaaacacgctggtggtgttgtaatatctccaact
actatcactgactttgcggccctttattgtgatgatgaaggtaaattcccagtaacgcaa
tttgataaaaacgatgttgagacggcaggcttagttaagttcgacttcttaggtctaaga
acgttaactatcttgcagtgggcgcttgatatgactaatgagcgcttagcccgagagggg
aaagagccggttgatatcaacgctattcctcttgatgataagccaagtattgagttactg
ctacgcgccgaaaccaccgcggtattccagctagaatctcgtggtatgaaagatttgatt
cgccgtctgaaacccgactgtttcgaagatatgatcgcactggtagcactattccgccca
ggtccattgcaatcaggcatggtagataactttatcgaccgtaagcatggtcgagaagaa
atatcctacccagatgttcaatggcaacatgaaagtctgcagccaatattagagccaacc
tacggtatcattctataccaagaacaagtaatgcagattgcgcaggttctagcaggttat
acgctaggtggcgctgatatgttgcgtcgtgcgatgggtaagaaaaagccagaggagatg
gcaaagcaacgttcaaccttcgaagaaggagctgttaataacggagttgacggcgaactt
gcaatgaaaatcttcgacttggtagagaagttcgcaggttatggttttaacaaatctcac
tcagctgcttatgccttagtatcgtaccaaacactgtggatgaaaacccactacccagca
gagtttatggctgcggtaatgtcggcggatatggataacaccgataaaattgttaccttg
gtagatgaatgtgaaaacatgaaactgaccttgcttccaccagatgtaaatgccggtgag
tacaagtttacggttaatctacaaggtgaaattgtctacggtatcggtgcgattaaaggg
gtcggtgaggcgcctgttgaagctattttagaagctcgtagcgaaggtggtccgtttaaa
gacttatttgatttttgtgcccgtgttgacttaaagcgtttaaataagcgtgttgttgaa
aagcttatttatgccggagcactcgatcaacttggcccagataagacacagcctggtcgt
gctaccttattggctagtttaaaagatgcaatgcgagcagccgatcagcatcataaggct
gagtcactagggcaggcagatttatttggtttacttgcgacagagccagatgaagttgaa
caagcattcattaaagcaaccgatttaaccgacaatgagtggcttgatggtgagaaagaa
accttaggcctgtatttaactggccacccaattaatcagtatcgtaaagagttaaaacac
tatacaacgggaagactagtcgatttacagccaactaatcgcgatgtgcagtccacagct
gcaggcttagtgatttctgcccgaaccctgataaacaaaaagggaaatcgttggggtctt
gtaactttagatgacaagagtgcccgtattgatgtacgcttattcccagaacagtttgaa
atgtaccaagatttgctgcaagtaaacaatatcttggtaatatcaggacaggtcagcttt
gataacttctccggtggcattacaatgaccgctagagacatatgcaccatcgctgaggcg
cgagaaaaacgtataaaagcgattaaaatgaccttaaatatggtgcagatcgaggcgaac
ttcttcgataatttacaaaaagtactggaaccttataagtttggtacttgtcctattaaa
gtattctatcaacgtccggatgcgttggctgagattactttaggaaccgaatggtgtgtt
acgccgagcgatgacttaattcacaagttatcgcttatggcggcgcaagatgtagaacta
gaatttaattaa
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