Pseudoalteromonas shioyasakiensis: KQ246_10545
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Entry
KQ246_10545 CDS
T08873
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
psho
Pseudoalteromonas shioyasakiensis
Pathway
psho03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psho00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KQ246_10545
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psho03019
]
KQ246_10545
Enzymes [BR:
psho01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KQ246_10545
Messenger RNA biogenesis [BR:
psho03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KQ246_10545
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QWV03978
LinkDB
All DBs
Position
complement(2267522..2268757)
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AA seq
411 aa
AA seq
DB search
MSVATFSELNLAPALLSALQEENYHTPTAIQAQTIPLILAGADVMGSAQTGTGKTAAFVL
PLLHNLMSAEVLPDAVKVLILTPTRELAQQVFASVERYAAHTDIKAALAYGGASIGPQIK
AIKAAQVVIATPGRLLDHVIKGSIKLSSINALVFDEADRMLDMGFIDEINRILRHVPKDR
QTLLFSATFDDSIFKLSKQLLNDPKLVEVNKRNSAAVEVEQLVYAVDEDRKRELVSHMIG
MKNWQQVLIFTRTKQTADVLAKEMCKDGLKTESIHGDKSQGARDKALHNFKSGATRVLVA
TDVAARGLDIASLKYVINYELPYVAEDYVHRIGRTGRAGEKGMAMSLVSIDEQWLLDEID
ILLDTRLTPQWLPGYEPDLTKEPKQVRKNTNKARRSRDKKRILGQKSRRRS
NT seq
1236 nt
NT seq
+upstream
nt +downstream
nt
atgtcagtagcgaccttttcagagttaaatcttgcacctgcattgctaagtgctttgcaa
gaagagaattatcacacccccacagcaattcaagcgcaaaccatcccactcattttagcg
ggagctgatgtaatgggcagtgcacaaaccggaacgggcaaaacagccgcctttgtttta
ccactactgcacaacttgatgtctgctgaagtactccctgatgctgttaaggtacttatt
ttaacgcccacccgagagctcgctcagcaagtatttgcaagtgtagagcgctatgctgcg
cacacagatataaaagcggcgcttgcttatggcggcgccagtattggcccacaaattaaa
gccataaaagctgcacaagttgtcatcgcaacacctgggcgcttacttgatcatgtgatc
aagggcagtattaagctctctagtattaatgctttggtattcgatgaagctgatcgcatg
cttgatatgggctttattgacgagatcaatcgtatcttgcgtcacgtgccaaaagatcgt
caaaccttattgttttcagcaacatttgacgacagcatctttaagctaagtaagcagtta
ttgaatgatcctaaattagttgaagtaaataaacgcaactcagcagcggttgaagttgag
cagctagtttatgcggttgatgaagatcgtaagcgtgaactggtatcgcatatgatcggt
atgaagaattggcagcaagtactaatattcactcgtactaaacaaaccgctgatgtgctt
gcaaaagaaatgtgtaaagacggtttaaaaactgaatctattcatggcgataaaagccaa
ggagcacgagataaagcgctacataactttaaatccggtgcaacaagagtactggttgcg
acagatgttgctgctcgtggccttgatattgcttcgttaaagtatgtaatcaattacgaa
ctgccttatgtggccgaagattatgtacaccgtattggtcgtacaggtcgtgctggcgag
aaagggatggcgatgtcgctggttagtattgatgagcaatggttactggatgaaatagat
atcttactcgacacgagacttactccacagtggttaccaggatatgagcctgatttaacc
aaagagccaaaacaggttcgtaaaaatacaaataaagcacggcgctcgcgtgataaaaaa
cgtatcttagggcaaaaaagtaggagacgttcctaa
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