Pseudoalteromonas shioyasakiensis: KQ246_17800
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Entry
KQ246_17800 CDS
T08873
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
psho
Pseudoalteromonas shioyasakiensis
Brite
KEGG Orthology (KO) [BR:
psho00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
psho03016
]
KQ246_17800 (rnd)
Enzymes [BR:
psho01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
KQ246_17800 (rnd)
Transfer RNA biogenesis [BR:
psho03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
KQ246_17800 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
DNA_pol_A_exoN
ICEA
Motif
Other DBs
NCBI-ProteinID:
QWV06902
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All DBs
Position
megaplasmid:75091..76221
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AA seq
376 aa
AA seq
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MQYQLIETQNQLNDFVEKITGKPVLAIDTEFMRRRTLYPEVALIQVYDGEHLALIDPLAE
LSLFDFWQVLKNPEVLKVLHSPSEDIEVFQKYAGFVPTPLFDTQFALQILGHGNCMGFAH
MVKELLDIEIDKSESRTNWLQRPLTEKQLDYAAADTYHLLPCFEIIKKQIDEAGFFDIVI
SESELVAQKRAYQTPAEQLYKDIKNAWQLRPHDLAVLRELAAWRREKAERKNLALNFVVK
EHNMVEIAKRKPTSLNALRRVPGVEPMEVNRSGVEILKCIERGKAVPVSEQPAQLKRLID
FPAYKKAAKDIKQKITKVAKEQGIPEDVLASKKQINQLISWNWKLDADERKTASKPDLFN
SWRYELVKDVLKEWQN
NT seq
1131 nt
NT seq
+upstream
nt +downstream
nt
gtgcaatatcaactgatcgaaacacaaaatcaattaaatgattttgtagaaaaaataaca
ggtaaaccggtactagcaattgatactgagtttatgcgtcgtcgtacgctttaccctgaa
gttgcacttattcaagtatatgatggtgagcatttagcgttaatcgacccactggctgag
ttgtcgctttttgatttttggcaagtactgaaaaaccctgaggtgttaaaagtactgcac
tcaccgtcagaagatattgaagtgtttcaaaaatatgccggttttgtaccaacaccattg
tttgatacccaatttgctctacaaatactaggccatggtaactgcatgggctttgcgcac
atggttaaagaattacttgatatcgaaattgataaaagtgaatcgcgcactaattggtta
cagcgcccactcactgagaagcagctagattatgccgctgccgatacgtatcacttactg
ccttgttttgaaattattaaaaaacaaattgatgaagctggcttttttgacatcgtgatc
agcgaaagcgagttagttgcgcaaaaacgtgcttatcaaacacctgcagagcagctttac
aaagacattaaaaatgcatggcaattacgaccgcacgacttagcggtattgcgcgaactt
gctgcatggcgccgtgaaaaggcagagcgcaaaaatctcgcacttaactttgtggtaaaa
gagcacaacatggttgaaattgctaagcgtaagcctacaagtttaaatgcgttacgccga
gtgccaggtgttgagcctatggaagttaaccgttcgggcgttgaaattttaaaatgtatt
gagcgtggtaaagctgttcctgtaagcgaacaaccagcacaattaaaacgtttaattgat
tttccggcatacaaaaaagccgctaaagatattaagcaaaaaattactaaagttgcaaaa
gagcagggtattcctgaagatgtattggcctctaaaaaacagattaaccaactaatcagc
tggaattggaagctcgatgccgatgagcgtaaaactgcatcaaaaccagacctgtttaac
tcatggcgctatgagcttgtaaaagacgtacttaaagagtggcaaaactga
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